Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2420 ATGGCAGTAAGTGCAAGTAAGGTTGGCTTTATCTTCTTGGTTGCTTTTGCCATTACTATTCCATGCCTTGAGGCTGGCATTGCTGAGTATGACGACTTTCTGAAAACACAAGCTAATTCGGCCCGTGAAATCGCTCTCCAGTCCTTCGTGCCCAACCCTGAAAATGTTACAACCGAGCTCAATATACACGTTAACATGGCATTGGAGGAGGCATCAAACAGCAACAGGAGGGAACTATCGGAAAAATTCAAGGGAAAATGCATAGCCACAAACCCAATTGATCGTTGTTGGAGGTGTAGGAAAAACTGGGCCAAAAACCGCTTTAAATTAGCTAAATGTGGCAAAGGTTTTGGAAGAAGGGCCACCGGAGGATTCGGTGGGCAAATCTATGTTGTCACCGATAACTCCGATGAAGATGTGATTAACCCTAAACCTGGGACTCTTAGGTATGGTGCCACCCGAGAGGGACCATTGTGGATCATATTTGCACATAGCATGGTCATTAAATTGAAGCAGGAATTGATGGTGTCATCCCACAAGACTATTGATGGTCGTGGTGCCAATGTTATAATTAAGGATGGTGGTGGCATTACCTTGCAATTTGTTAATAATGTCATTATTCATGGCATTCGCATTAAAAATATCAAGTCTTTGGATGGAGGTATTATTAGGGACTCTTGGAACCACATTGGACTAAGAACAAGGAGTGATGGAGATGCCATTTCCATTTTTGGTTCTTCCAACATTTGGATTGATCACATTTCCCTCTCTGATTCTGCCGATGGTCTTGTCGACGTTATCCAGGGTTCTACTGCTATCACCATCTCTAATTGCCACTTGACCAAACATAACGACGTGATGCTGTTTGGAGCTAGCGATACATACGATCCTGACAAGATTATGCAGATTACAGTGGCATTCAACCATTTTGGGCAGGGACTGATCCAGAGAATGCCCAGATGCAGATGGGGCTTCTTCCATGTGTTGAACAATGACTACACTCACTGGCAGATGTATGCAATTGGTGGAAGCTCAGGACCAACAATTCTTAGTCAAGGAAATCGTTTCATTGCACCCAACAATGATGCTGCCAAGTTAGTCACACACAGGGACTATGCAGGACCTGAAGTGTGGGGAAAATGGCAATGGAGATCAGATAATGACTTGTTCATGAATGGAGCAAAGTTTATCGAGTCCGGAACACCTATTGGTAAATTACCATTCAACAAAGGGTTCTTAATGAAACCAAGACCTGGATCTCAAGCCAGTAGGCTAACAAAGTATGCTGGTGCCCTCAATTGCAGGGTAGGTAGGCCTTGCTAG 1323 0.4399 MAVSASKVGFIFLVAFAITIPCLEAGIAEYDDFLKTQANSAREIALQSFVPNPENVTTELNIHVNMALEEASNSNRRELSEKFKGKCIATNPIDRCWRCRKNWAKNRFKLAKCGKGFGRRATGGFGGQIYVVTDNSDEDVINPKPGTLRYGATREGPLWIIFAHSMVIKLKQELMVSSHKTIDGRGANVIIKDGGGITLQFVNNVIIHGIRIKNIKSLDGGIIRDSWNHIGLRTRSDGDAISIFGSSNIWIDHISLSDSADGLVDVIQGSTAITISNCHLTKHNDVMLFGASDTYDPDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWQMYAIGGSSGPTILSQGNRFIAPNNDAAKLVTHRDYAGPEVWGKWQWRSDNDLFMNGAKFIESGTPIGKLPFNKGFLMKPRPGSQASRLTKYAGALNCRVGRPC* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2420 440 Pfam Pectate lyase, N terminus 27 79 IPR007524 GO:0030570
Apr4g2420 440 Pfam Pectate lyase 171 356 IPR002022 -
Apr4g2420 440 SMART amb_all 165 362 IPR002022 -
Apr4g2420 440 PANTHER PECTATE LYASE 6 440 - -
Apr4g2420 440 Gene3D - 90 433 IPR012334 -
Apr4g2420 440 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Apr4g2420 440 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Apr4g2420 440 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Apr4g2420 440 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Apr4g2420 440 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Apr4g2420 440 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Apr4g2420 440 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Apr4g2420 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Apr4g2420 440 SUPERFAMILY Pectin lyase-like 91 431 IPR011050 -
Apr4g2420 440 PANTHER PECTATE LYASE 18-RELATED 6 440 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2420 Apr-Chr4 33173042 33174895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2420 10 440 Polysaccharide Lyase AT1G14420 56.152 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2420 K01728 - gmx:100780236 708.753