Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2417 ATGCAACAATCTCCCACTGCCTCTCTCTTCCACCACCTACAGCCCCTTTGGACTGATTTTCAGAACTGCCTTTGTTTGTTTTGGAGTTTTTGGAAGATGGGGTTTAGGAATAATGCAATTCAGGCTGGGAGTTTGGATGTGGGAAAGTCAAAGGGAAGGATGAAGCGGGATGGTGGTGAAAAGGAGATTGGATGTTGTATTAAATTCTGTTTCATTGGCAGCTGCATACCTTCAAGATCAAAGGTTGATAACTCCATAAGTGGCACTAGTGCTCATAGTGTGGAAAGAACATCTGCATGTGAGAAAAGAAAGAAGGAAACAAGTGCTCCTCCAGGGTCCTCTACAACAACCAGTAATGCAGAAAGTATCCCTTCCACTCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACGTTCAATGAGCTTAAGATGGCTACAAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAAGGAGGGTTTGGTTGTGTTTTCAAGGGTTGGATTGAGGAAAATGGAACTGCACCTGTGAAACCAGGTACCGGGCTTACTGTTGCAGTCAAGACCCTCAACCATGATGGTCTTCAGGGTCACAAAGAGTGGCTTGCAGAGTTAAACATTCTTGGTGACCTTGTCCATCCGAATCTGGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATGAATTTATGCCCCGTGGAAGTTTGGAGAATCACCTCTTCAGAAAAGGGTCCTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTTCTTTTCTTCATGAAGAAGCGCAGAGGCCTGTAATCTATCGTGATTTCAAGACATCTAATATTCTATTAGATGCGGAATACAATGCGAAGCTCTCTGATTTTGGACTTGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTTATGGGAACGTATGGTTATGCAGCTCCTGAGTATGTGATGACTGGGCATTTGACATCAAAAAGTGACGTCTATAGTTTTGGAGTAGTGCTACTTGAAATGCTCACTGGGCGGCGATCTATCGATAAGAATAGACCAAATGGGGAACACAATCTTGTGGAGTGGGCAAGACCTGTACTTGGAGACCGGAGGTTGTTATTCCGCATAATTGATCCTCGCCTTGAAGGCCACTTCTCTGTTAAAGGGGCACAAAAAGCTGCCCAGCTAGCTGCTCAATGCCTTAGCCGCGATCCAAAATCAAGACCTGTGATGAGTGAAGTTGTTCAAGTTCTAAAGCCTTTGCAAACCCTCAAGGATATGGCTATCTCATCTTATCACTTCCAGGTTGTGCGAGTAGATCGTACCATGTCCATGCCAAATTCTAAAAATGGCATGCAAACACAGTTAGCATCTTTATCAAGGAAGGGTCAACCTGTAAGGACCTTGTCCAGTCCACGTGGTCCACATGGTTCTCCGTATCATCATTATATGAAGTCACCAAAACCAAATGGATAA 1527 0.4348 MQQSPTASLFHHLQPLWTDFQNCLCLFWSFWKMGFRNNAIQAGSLDVGKSKGRMKRDGGEKEIGCCIKFCFIGSCIPSRSKVDNSISGTSAHSVERTSACEKRKKETSAPPGSSTTTSNAESIPSTPKFSEELKVSSRLRKFTFNELKMATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELNILGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLSFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRLLFRIIDPRLEGHFSVKGAQKAAQLAAQCLSRDPKSRPVMSEVVQVLKPLQTLKDMAISSYHFQVVRVDRTMSMPNSKNGMQTQLASLSRKGQPVRTLSSPRGPHGSPYHHYMKSPKPNG* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2417 508 SUPERFAMILY Protein kinase-like (PK-like) 128 435 IPR011009 -
Apr4g2417 508 Pfam Protein kinase domain 157 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2417 508 MobiDBLite consensus disorder prediction 462 508 - -
Apr4g2417 508 ProSiteProfiles Protein kinase domain profile. 154 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2417 508 PANTHER OS01G0588500 PROTEIN-RELATED 88 500 - -
Apr4g2417 508 Gene3D Transferase(Phosphotransferase) domain 1 240 456 - -
Apr4g2417 508 MobiDBLite consensus disorder prediction 109 129 - -
Apr4g2417 508 Gene3D Phosphorylase Kinase; domain 1 134 239 - -
Apr4g2417 508 ProSitePatterns Protein kinases ATP-binding region signature. 160 192 IPR017441 GO:0005524
Apr4g2417 508 MobiDBLite consensus disorder prediction 462 484 - -
Apr4g2417 508 PANTHER RECEPTOR-LIKE KINASE PLANT 88 500 - -
Apr4g2417 508 MobiDBLite consensus disorder prediction 93 129 - -
Apr4g2417 508 CDD STKc_IRAK 160 438 - -
Apr4g2417 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2417 Apr-Chr4 33144339 33149177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2417 102 451 Glycoside Hydrolase AT3G07070 51.549 5.51e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr4g2417 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2417 - - aprc:113861691 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0175 6 1721755 1726881 Apr4g2417 4 33144339 33149177 PCT