Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2409 ATGGGCGAAAAGGATGACATGTTGGGGTTGAGTTTGAGTTTGAGTTTGGGAGTGAATCAACCTCCTCCTTTGAAGGTCAATCACATGCAGAACCCTCAACAAACGGTTCCCACAAATCATAACAGGACTTCCTGGGCTGATTTGTTTCAGTTACCAGATCGGAGCTCCGACATGATCCGAGGAATTGATGTCAATTCAGCGCCGTCGATGGCGGCGGATTGCGACGACGACAACGGCGTTTCCTCGCCGAACAGCGCGGTGTCGAGCGTCAGCGGTGGCAAGCGGAGCGAGAGAGACGACGACAATGCTGCCGCCGCCGCCGAGAGAACGTCGTGCTCGCGGGGGAGTGACGATGAAGACGGCGGTGGCGGCGACGCAGGGCGGAAGAAGCTGCGTCTGACGAAGGAACAATCCATGGTGTTGGAAGAAACGTTCAAGGAGCATAATACGCTGAATCCGAAACGAAAGCAAGCTCTGGCAGAAGAGTTGAATTTGAAGCCTAGACAAGTTGAAGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAGACAGAAGTGGATTGTGAATACTTAAAGAGATGTTGTGAGAATTTAACTGAAGAAAATAGAAGGTTGCAAAAGGAAGTCCAAGAGCTAAGGGCATTGAAATTATCCCCCCACCTTTACATGCATATGAACCCTCCTACCACTCTTACGATATGCCCTTCTTGTGAGCGTGCTGTCTCAGCCGCATCCTCCTCCTCTGCCACCGTTCACTCGGCGCAGCCGCCGAGTAATCGCAATTTGATGGGTGCAAACATCCGGCGGCGGGTGCCGGTCAACCCATGGCCGTTTGAAGGTTCAATTCCTCGCCCATAA 864 0.522 MGEKDDMLGLSLSLSLGVNQPPPLKVNHMQNPQQTVPTNHNRTSWADLFQLPDRSSDMIRGIDVNSAPSMAADCDDDNGVSSPNSAVSSVSGGKRSERDDDNAAAAAERTSCSRGSDDEDGGGGDAGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPHLYMHMNPPTTLTICPSCERAVSAASSSSATVHSAQPPSNRNLMGANIRRRVPVNPWPFEGSIPRP* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2409 287 Coils Coil 190 220 - -
Apr4g2409 287 Pfam HD-ZIP protein N terminus 1 99 IPR006712 GO:0005634
Apr4g2409 287 MobiDBLite consensus disorder prediction 20 41 - -
Apr4g2409 287 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Apr4g2409 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 6 279 - -
Apr4g2409 287 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Apr4g2409 287 Gene3D - 132 182 - -
Apr4g2409 287 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Apr4g2409 287 SMART HOX_1 126 188 IPR001356 GO:0003677
Apr4g2409 287 PANTHER - 6 279 - -
Apr4g2409 287 MobiDBLite consensus disorder prediction 249 264 - -
Apr4g2409 287 CDD homeodomain 128 185 IPR001356 GO:0003677
Apr4g2409 287 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Apr4g2409 287 MobiDBLite consensus disorder prediction 112 132 - -
Apr4g2409 287 MobiDBLite consensus disorder prediction 69 132 - -
Apr4g2409 287 SUPERFAMILY Homeodomain-like 116 185 IPR009057 -
Apr4g2409 287 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Apr4g2409 287 MobiDBLite consensus disorder prediction 249 268 - -
Apr4g2409 287 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2409 Apr-Chr4 33045766 33048444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2409 1 241 Homeobox Transcription Factor Family AT3G60390 62.857 1.61e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr4g2409 HD-ZIP_N 7.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2409 K09338 - gmx:100819624 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2409 4 33045766 33048444 Apr4g2409 4 33045766 33048444 ECH
Apr10g0513 10 12179138 12182277 Apr4g2409 4 33045766 33048444 PCT