Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2407 ATGGGCTTCTGGTCATCGGCGCTTCGATCAAAACGCCTCGTCTCGCCGGCGGAGAAGGCAGCGCGCGACAACTCCGACCGAGGACTCTCCCGACGCCTTGGCGTCATCGATCTTCTCCTCCTCGGGATCGGCGCCTCCATCGGTGCCGGCATCTTCGTCGTCACCGGCACTGTCGCCCGCGACGCCGGACCTGGAGTAACAATAAGTTTTGTGCTTGCTGGAGCATCGTGTGTTATAAACGCACTCTGTTATGCTGAGCTGGCTTCTCGATTTCCTGCTGTTGTTGGAGGAGCATACTTATATTCGTATACAGCTTTTAATGAACTAACAGCTTTTCTTGTTTTTGGTCAATTAATGCTTGACTATCATATTGGGGCAGCTAGTATAGCAAGAAGCTTAGCAAGCTATCTAATAAATATTCTTGAACTTTTCCCTGTTTTCAAAGATAATATTCCAAAATGGATTGGACATGGCGAAAATGTCGGAGATGTGCTCTCCATCAATATCTTAGCTCCAATTCTCCTCATTCTTCTCACTCTAATTCTCTGTCAAGGTGTTCAAGAATCATCAATTGTGAATTCTTTAATGACAGTGACCAAGGTAATCATTGTTATTGTCGTCATTTTTGCTGGAGCTTTTGAGGTTGATGTTTCCAACTGGTCTCCCTTTGCTCCCAATGGTTTAAAAGCCATATTTACAGGAGCTACTGTAGTCTTCTTTGCATATGTTGGATTTGATGCAGTTGCCAATTCTGCTGAAGAATCTAAGAGACCGCAGAGGGATTTGCCCATAGGCATAATCGGAAGCCTCTTAGTATGTATTGTATTGTACATCGGAGTATGCTTAGTGCTTACTGGAATGGTTCCGTACATGTTTCTAGGAGAAGAAGCTCCTCTGGCTGAAGCTTTTACGTCTAAGGGATTAAAATTTGTTTCTGTTCTGATTAGCATTGGTGCTGTTGCTGGACTTACAACAACACTCCTTGTTGGTCTTTACGTTCAGTCCCGATTATATCTTGGGCTTGGCAGGGATGGTTTACTACCCTCAATATTTGCTAAAGTTCACTCCAAACGCCACACCCCTATTCATTCTCAGGTCTGGGTTGGCTTTGTTGCCAGTGTTTTGGCTGGGCTATTGAATGTGCATGTGCTCTCTCACATTCTTTCTGTTGGTACACTGACTGGCTATTCAGTTGTCTCAGCATGCGTTGTTGTACTTCGCTGGAAAGATAAGACAAACAGTCAAGTTTCATTTTCAGCTAAGCGGGAAGGTGTCATTTGCCTCGTTGTTGTTGCTGTTTGTGGATTTGCTGCTGGGCTCTCGTACCGTTATGATGGTTCGCCTATTTTTCTGAGTCTAGCTATAGTTATTGCACTTGGTGCTTCTGCTGCTCTTGTTTTCCGCCAGGTGAGTGCTTATGGAGATGCACAGGGGTTCTCTTGCCCTGGGGTCCCTCTTCTGCCAAATATCTGCATCTTTTTTAACATGTTCTTATTTGCCCAGCTACATCAGGAAGCATGGGTGAGATTTGTGGTTCTTTGTGCTATTATGGTCGGAGTTTATGCACTATATGGCCAGTATCATGCTAACGCCAGCGCAGAAGAGAATCCTGTTTATCACGTGGCACCGGAGGATGACGTTTAA 1644 0.4513 MGFWSSALRSKRLVSPAEKAARDNSDRGLSRRLGVIDLLLLGIGASIGAGIFVVTGTVARDAGPGVTISFVLAGASCVINALCYAELASRFPAVVGGAYLYSYTAFNELTAFLVFGQLMLDYHIGAASIARSLASYLINILELFPVFKDNIPKWIGHGENVGDVLSINILAPILLILLTLILCQGVQESSIVNSLMTVTKVIIVIVVIFAGAFEVDVSNWSPFAPNGLKAIFTGATVVFFAYVGFDAVANSAEESKRPQRDLPIGIIGSLLVCIVLYIGVCLVLTGMVPYMFLGEEAPLAEAFTSKGLKFVSVLISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHSKRHTPIHSQVWVGFVASVLAGLLNVHVLSHILSVGTLTGYSVVSACVVVLRWKDKTNSQVSFSAKREGVICLVVVAVCGFAAGLSYRYDGSPIFLSLAIVIALGASAALVFRQVSAYGDAQGFSCPGVPLLPNICIFFNMFLFAQLHQEAWVRFVVLCAIMVGVYALYGQYHANASAEENPVYHVAPEDDV* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2407 547 Pfam C-terminus of AA_permease 479 528 IPR029485 -
Apr4g2407 547 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 3 543 - -
Apr4g2407 547 Pfam Amino acid permease 33 436 IPR002293 GO:0016020|GO:0022857|GO:0055085
Apr4g2407 547 PANTHER CATIONIC AMINO ACID TRANSPORTER 9-RELATED 3 543 - -
Apr4g2407 547 PIRSF AA_transporter 17 543 - -
Apr4g2407 547 Gene3D Amino acid/polyamine transporter I 29 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2407 Apr-Chr4 33033616 33037787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2407 3 472 Organic Solute Cotransporters AT1G05940 73.684 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2407 K03294 - gmx:100804988 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2407 4 33033616 33037787 Apr4g2407 4 33033616 33037787 ECH
Apr6g0134 6 1254755 1257125 Apr4g2407 4 33033616 33037787 PCT