Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2405 ATGAATCGTAGAGTGAGGAGGAAGGTGGCAAGGAGAAGCAAAGGGAATGTGGTGCTGCCTAGTTTCCCTGAAATTCAAGACGAAGTTTTGGATTCAGAACAACAAGGGGTTGTTGATTGGAGAAGCTTACCTGATGATACAGTAATTCAGCTATTGTCTTGTCTGAGTTATCGAGATCGAGCTAGCTTATCGTCAACTTGTAGGACATGGAGGTTTCTTGGTAGCTCCCCGTGTTTGTGGAATGCTCTGGATCTTCGTTCCCACAGGTTTGATGCCAGCATGGCATCATCACTTGCTCCTAGGTGTGTGCATCTTCAGAAGCTTAGGTTTCGTGGGGCAGAGTCTGCTGATGCAATAATTCATCTTCGAGCAAGGAACTTACAAGAAATAAGTGGCGACTATTGCAGGAAAATTACTGATGCAACTCTTTCGGTGATTGCGGCTCGGCATGAGTTACTTGAGAGTCTTCAGCTTGGACCAGATTTCTGTGAGAGAATCAGTAGTGATGCTATTAAAGCCATAGCTCATTGCTGTTCTAGATTAAATAAACTTAGGCTCTCGGGCATCAGGGATGTAAATGCTGATGCTATTAATGCCTTGGCTAAGCATTGTCCAAATTTGACTGATATTGGGTTTATTGACTGCCTGAATGTTGACGAGCTTGCATTGGGAAACGTGTTATCGGTTCGATTCCTTTCTGTTGCAGGAACATCAAGTACGAAGTGGAATGTGGTTTCCCATCTTTGGCATAAGCTTCCAAACCTGCTTGGATTAGATGTTTCCAGAACTGATATTGGTCCATCTGCTGTTTCCAGATTGTTATCCTTATCACAGCATTTGAGGGTTTTAATTGCTTTGAATTGTCCTATCCTTGAAGAAGACACTAGCTTCTCCGCTAGTAAATATAAAAACAAGTTATTAATTTCCCTTTTTACTGATATTTTTAAAGGACTAGCTTCTTTATTTTTTGATAATACAAAGAGAGGAAAGAATGTGTTTTTGGACTGGAGGACTTCCAAGAATAATGATAAGGACCTTAATGAAATTATTCCCTGGCTTGAGTGGATGCTATCCCATACGCTTTTGCGTTCCGCTGAGAGTCCTCAACAAGGTCTTGATAATTTCTGGGTTGAACAAGGTGGAGCGCTTTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAAGAGAGGGCAGCCACAGGTCTTGCAACTTTTGTTGTAATTGATGATGAAAATGCTAGCATAGATTGTGGAAGGGCTGAGGCAGTTATGCGAGATGGTGGCATTCGCCTGCTACTTGGCCTAGCAAAATCTTGGAGGGAAGGGCTTCAGTCTGAGGCGGCTAAGGCCATTGCAAATTTGTCCGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAGGGTGGGATTGAGATTCTTGCTGGTTTGGCTAGGTCAATGAACAAGCTGGTGGCTGAAGAAGCTGCTGGAGGATTGTGGAATCTCTCTGTTGGAGAAGAGCACAAGGAACGTGCAGCAGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAGGTTGCACTGGCAGGAGGTGTACATGCTCTGGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAATTTAGCTGCTCATGGAGATAGCAACAGTAACAATGCTGCTGTTGGACAAGAAGCAGGTGCCCTTGAGGCTCTTGTTCAGCTTACACGTTCTCCCCATGAGGGTGTCAGGCAAGAAGCTGCTGGTGCACTCTGGAATTTGTCATTTGACGATAGAAATCGAGAGGCCATTGCAGCAGCTGGTGGAGTTCAGGCCTTGGTTGCTCTTGCCCAATCTTGTTCTAATGCCTCTGCTGGACTTCAAGAGAGGGCTGCTGGTGCTTTGTGGGGATTGTCAGTCTCTGAAGCCAATAGCATTGCCATTGGACGAGAAGGAGGTGTTGCACCTCTGATTGCACTGGCACGATCAGAAGCAGAGGATGTTCATGAAACTGCTGCAGGAGCACTATGGAATCTTGCTTTCAACCCTGGTAATGCTCTACGAATTGTAGAGGAAGGTGGAGTATCTGCACTTGTAGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGGTTCATGGCTGCATTGGCATTGGCTTACATGTTTGACGGGAGAATGGATGAATTTGCTTTAGTAGGCACCATGTCTGAAAGTGTCTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCTTTTGTCCTTATGTTCTCTGATCCACAAGCATTTGCGGCTGCTGCTGCATCATCGGCTCCTGCAGCATTAGCACAAGTTACTGAAGGTGCTCGCATTCAAGAAGCAGGACATCTGAGATGCAGTGGTGCCGAAATTGGAAGATTTGTTGCTATGCTACGAAATCCATCGTCTATACTGAAGGCTTGTGCAGCATTTGCTCTTCTCCAGTTTACAATTCCTGGTGGACGACATGCTGTGCACCACGCAAGCCTCTTGCAGACTGCAGGAGCAGCAAGAGTACTGCGTGGTGCGGCTGCAGCAGCAACTGCTCCACTTGAAGCTAAAATCTTTGCCAGAATCGTTCTCCGCAATCTTGAGTATCACCAGATCGAGCACACAGTGTAG 2676 0.4574 MNRRVRRKVARRSKGNVVLPSFPEIQDEVLDSEQQGVVDWRSLPDDTVIQLLSCLSYRDRASLSSTCRTWRFLGSSPCLWNALDLRSHRFDASMASSLAPRCVHLQKLRFRGAESADAIIHLRARNLQEISGDYCRKITDATLSVIAARHELLESLQLGPDFCERISSDAIKAIAHCCSRLNKLRLSGIRDVNADAINALAKHCPNLTDIGFIDCLNVDELALGNVLSVRFLSVAGTSSTKWNVVSHLWHKLPNLLGLDVSRTDIGPSAVSRLLSLSQHLRVLIALNCPILEEDTSFSASKYKNKLLISLFTDIFKGLASLFFDNTKRGKNVFLDWRTSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDNFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASAGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGRMDEFALVGTMSESVSKSVSLDGARRMALKHIEAFVLMFSDPQAFAAAAASSAPAALAQVTEGARIQEAGHLRCSGAEIGRFVAMLRNPSSILKACAAFALLQFTIPGGRHAVHHASLLQTAGAARVLRGAAAAATAPLEAKIFARIVLRNLEYHQIEHTV* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2405 891 Pfam F-box-like 40 86 IPR001810 GO:0005515
Apr4g2405 891 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Apr4g2405 891 Gene3D - 657 888 IPR011989 -
Apr4g2405 891 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 614 659 IPR000225 GO:0005515
Apr4g2405 891 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 573 615 IPR000225 GO:0005515
Apr4g2405 891 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Apr4g2405 891 SUPERFAMILY RNI-like 62 293 - -
Apr4g2405 891 Gene3D - 563 656 IPR011989 -
Apr4g2405 891 Gene3D - 382 502 IPR011989 -
Apr4g2405 891 Gene3D - 503 562 IPR011989 -
Apr4g2405 891 PANTHER PROTEIN ARABIDILLO 1 1 877 IPR044583 -
Apr4g2405 891 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 658 700 IPR000225 GO:0005515
Apr4g2405 891 SMART arm_5 516 557 IPR000225 GO:0005515
Apr4g2405 891 SMART arm_5 647 687 IPR000225 GO:0005515
Apr4g2405 891 SMART arm_5 688 729 IPR000225 GO:0005515
Apr4g2405 891 SMART arm_5 603 646 IPR000225 GO:0005515
Apr4g2405 891 SMART arm_5 458 498 IPR000225 GO:0005515
Apr4g2405 891 SMART arm_5 562 602 IPR000225 GO:0005515
Apr4g2405 891 SMART arm_5 417 457 IPR000225 GO:0005515
Apr4g2405 891 SMART fbox_2 43 83 IPR001810 GO:0005515
Apr4g2405 891 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 527 558 IPR000225 GO:0005515
Apr4g2405 891 SUPERFAMILY ARM repeat 365 718 IPR016024 -
Apr4g2405 891 Pfam Armadillo/beta-catenin-like repeat 603 645 IPR000225 GO:0005515
Apr4g2405 891 Pfam Armadillo/beta-catenin-like repeat 422 456 IPR000225 GO:0005515
Apr4g2405 891 Pfam Armadillo/beta-catenin-like repeat 565 601 IPR000225 GO:0005515
Apr4g2405 891 Pfam Armadillo/beta-catenin-like repeat 649 686 IPR000225 GO:0005515
Apr4g2405 891 Pfam Armadillo/beta-catenin-like repeat 526 557 IPR000225 GO:0005515
Apr4g2405 891 Pfam Armadillo/beta-catenin-like repeat 463 497 IPR000225 GO:0005515
Apr4g2405 891 Gene3D Ribonuclease Inhibitor 32 312 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2405 544 731 U-box Gene Family AT2G23140 35.979 2.12e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2405 - - ccaj:109792060 1546.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2405 4 33014892 33028132 Apr4g2405 4 33014892 33028132 ECH