Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2398 ATGTCAGTCACCACCATGGATTCAGACTTTGCATGTTTGAAACAAATTCAACAATACCTGCTTGACAATGATTCAAGCATTCTAACATCACATCAAGCTCTTCCAAGCCCAAGCCACGATAATAGTTCACACACAAATGAGTTCAATTTTGAGCATTCTAACACCACGGCAGCGCGTGAAGTCCACGCGCCTCCAAAATGGAAGCATTACCGGGGCGTGAGGCGTAGGCCGTGGGGGAAGTTTGCGGCGGAGATAAGAGATCCAAAGAAAAATGGTGCAAGGGTTTGGCTTGGAACTTATGTAACAGAAGAGGAAGCGGCTTTGGCTTATGACAAAGCCGCTTTCAAGATGCGAGGCCGAAAAGCCAAGCTGAATTTTCCTCACCTCATTGGCTTGGATGAGCCGTTGGAGCCGTCGAGAACAACAGCTCCTAAGCGGCGGTTGACGGAAACTTCTCCACCATCATCACCAAATGATAGTTGTGAATCACAAGGGTCAAAGAGGAGGAGGAGGAGCTTAGTTGATCTACTAAATAACTTAGCCAAAAATAGAAGCCAAGCCAAGGTGGTTGAAATGGCCTTAGAGGCAAATGAGGTTGAACAATGGGTGGATGAATTGAGTGATTGCAGTTTAATCCAGTGCTCTTATTAG 651 0.4624 MSVTTMDSDFACLKQIQQYLLDNDSSILTSHQALPSPSHDNSSHTNEFNFEHSNTTAAREVHAPPKWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAALAYDKAAFKMRGRKAKLNFPHLIGLDEPLEPSRTTAPKRRLTETSPPSSPNDSCESQGSKRRRRSLVDLLNNLAKNRSQAKVVEMALEANEVEQWVDELSDCSLIQCSY* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2398 216 Gene3D AP2/ERF domain 68 128 IPR036955 GO:0003700|GO:0006355
Apr4g2398 216 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 2 186 - -
Apr4g2398 216 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Apr4g2398 216 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Apr4g2398 216 MobiDBLite consensus disorder prediction 132 169 - -
Apr4g2398 216 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Apr4g2398 216 MobiDBLite consensus disorder prediction 145 162 - -
Apr4g2398 216 PANTHER DNA-BINDING DOMAIN 2 186 IPR044808 GO:0003700|GO:0009873
Apr4g2398 216 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Apr4g2398 216 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Apr4g2398 216 PRINTS Ethylene responsive element binding protein signature 109 129 IPR001471 GO:0003700|GO:0006355
Apr4g2398 216 CDD AP2 68 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2398 Apr-Chr4 32970110 32970760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2398 56 216 AP2-EREBP Transcription Factor Family AT2G44840 49.701 2.19e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g2398 AP2 9.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2398 K09286 - gmx:102663872 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2398 4 32970110 32970760 Apr4g2398 4 32970110 32970760 ECH
Apr10g0499 10 12059667 12060311 Apr4g2398 4 32970110 32970760 PCT