Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2397 ATGATTTCCATCACCATGGATTCCAAGGTTGCATTCTTGGAATCTGTTCAACAATACCTACTTGGGCACGATTCAAGAAATGTCATGGACGTTTTAGAACCTAAAAGCCACCAATCTACATCTCATGATCCATTTTCAAACCCTACATGTGATGGTGATTCGGAGAACATTGTTTTATGTAGGGAGCATGCATTGACTATGGTGGAGCGTGAAGTACACGCGCCACCAACATGGAAGCACTGCAGAGGCGTGAGGCGTAGGCCGTGGGGAAAGTTTGCGGCGGAGATAAGGGATCCAAAGAAGAATGGAGCTAGGGTTTGGCTTGGAACTTATGAAACCGAAGAAGCAGCAGCTTTGGCTTATGATAAAGCCGCTTTCAAGATGCGTGGTCAAAAAGCTAAGCTTAACTTTCCTCATCTTATTGGCTCGGATAATAAATTGTTAGAGCCAATGAAAGTGACAACTTCTAAGCGGAGGTTGTCAAAAATTTCTCCACCTTCATCGCCATCTTCAGAAGATAGTTTAGAGTCACAGGGAATAAAGAGGAGGAAGGGCTTAGTTGATTTACTGAATAAGTTAGCTAAGAATCTAAGCCAAGCCAAGGTGGTTGAAGTGGGGTTAGAGGAAAGTTGCAGATCATTTGTTGAATGA 651 0.4332 MISITMDSKVAFLESVQQYLLGHDSRNVMDVLEPKSHQSTSHDPFSNPTCDGDSENIVLCREHALTMVEREVHAPPTWKHCRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEAAALAYDKAAFKMRGQKAKLNFPHLIGSDNKLLEPMKVTTSKRRLSKISPPSSPSSEDSLESQGIKRRKGLVDLLNKLAKNLSQAKVVEVGLEESCRSFVE* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2397 216 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
Apr4g2397 216 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Apr4g2397 216 MobiDBLite consensus disorder prediction 157 175 - -
Apr4g2397 216 MobiDBLite consensus disorder prediction 154 179 - -
Apr4g2397 216 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Apr4g2397 216 PRINTS Ethylene responsive element binding protein signature 120 140 IPR001471 GO:0003700|GO:0006355
Apr4g2397 216 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Apr4g2397 216 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
Apr4g2397 216 PANTHER DNA-BINDING DOMAIN 1 199 IPR044808 GO:0003700|GO:0009873
Apr4g2397 216 Gene3D AP2/ERF domain 80 139 IPR036955 GO:0003700|GO:0006355
Apr4g2397 216 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 199 - -
Apr4g2397 216 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2397 Apr-Chr4 32965749 32966399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2397 82 188 AP2-EREBP Transcription Factor Family AT2G44840 63.551 4.57e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g2397 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2397 K09286 - gmx:100806588 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2397 4 32965749 32966399 Apr4g2397 4 32965749 32966399 ECH