Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2368 ATGCCTCCGAGAGTGGTGAAGAGAGGGGCTGCGGCAAAGAGAGCTACGAGGGGATCCTCAAAAACTGCACCTGAAAAACAACAGCAACAGCAGCACGAGCCTGAAGCTGCAGAAGTGGTTGCGGTGCATCATGAAGAAAATCCAGTTGTTGATGTTGGGGTGGAAGAGAAGCCCAATGATGTGAATCAATTGGCTCCAGAAGCTGGGACAGTGCCTAATGGATCGGCTGTGGTGGAAAACAATGAAGGGGAGGTTAAGGAGTCCATAGATGAATATGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCCTGAGTATGAACCTGAGGAGTATGGTGGTGTTGACTATGATGAGAAGGAAATTGAACAAGATGAAGGTGGTCAGGAAGTGGGAGATGATGTAGAGGAAGAACCTGAAGAGAATGTTGGTGAGGAAGAGGGTGATTCAGGGGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGACAATGATGATGAACATGAAAATGGTGGTGAGGAGTATGAGCATGAGCATGACAATGCACAGATGGCTGACGTGGAGGAAGCGGAACACCGTGAAGTTGTAAAGGAGAGGCAAAAGCGGAAGGAATTTGAAGTATTTATTGGGGGCCTAGATAAGGATGCTACTGAACATGATTTAAGGAAGGTTTTCAGTAAAGTTGGAGAGGTTACTGAAGTCAGGTTGATGATAAATCCCCAGACTAAAAGGAACAAGGGATTTGCTTTCTTGCGTTTTGAAACTGTTGAGCAAGCAAAAAGAGCCGTGGCAGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTAGTCCCAGTCAGGACAGTGATACACTCTATTTAGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACGTTATGGAGTTGAAAATGTGGAGGATTTGACTTTAGTAGAAGATGATAACAATGAGGGAATGAACCGTGGATTTGCATTTTTGGAGTTTTCATCTCGCTCAGATGCTAAGGAAGCCTATAAGCGATTGCAAAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCAGACTCCTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCACTACCTCCTTCGTGGGATGAGGATTATGTGCGGGATGTTCTTAAGAAATACGGAGATATTGAAAAAATTGAGCTCGCTAGGAACATGCCAGCTGCTCGGAGGAAGAATTATGGATTTGTTACATTTAGTACTCATGCTGCTGCTGTGGAATGCGCTGATAGCATTACCAGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCACGGCCTCTTTCAAAACCTCCTCACCGTGGAAAACATGTTAATCATGGGGGCTTCCGTTCTGGCCGCAATTCTGGAAGTTTGGTAAGGCCTTCACAGCGTCGACCTGCACCACGTAGTCTTCCTGCCCATGTAGTGAGAGGAGTTGGAAGTCGTATTCCACCAGTTAGACCTGTTGGTGTGAGAAACAGACGTTCTGTCATGTCCATGCAAGAAAGAGCCAGGCCAGTGGCTCCTCCAGTTAGATCCTATGACAGGAGATTCACTGCTCCTGCATATCCAAAAAGTAGTGGGAAGAGAGATTATAGTCGACGTGAGGATCTACCTCCTCCGAGAAGTAGAGTTGCTGCAGATTATGGCTCTAGGGTGGCTTCTCAAAGGCACACATCTTATAGGGATTATCCAACCCGTGGCTCTGACTATTCTGAGGTGCATAGAAGTACATCTCGTGCTGCACCAAAGAGAGGTTATATTGATCATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCTCCCCATCTAAGTTACCGTGAAGGACGCCCCCGTGATTATGACACTCTATCTGGCTCGAAACGTCCTTATGCTGCCATAGATGATGTTCCTCTACGGTATGATACTGGTACTCGCCAGTCAAGATCTCGTTTGGATTATGACTATGGAGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTCTTGGATATAGTGGCAGCAGAAGTTCTACTTCTAATCAAGACTTACATGGGACATATGGCAGTCGACAGGGCACGAGTTACAGCGGAGGTTCATTTGGTTGTAGTGATGGTGGTATGTACTCATCAAGCTATGGTGGTGATTACATATCCCGTGGAAGTGATGTTGGTGGCCGTTCATATTCATCCATGTATTCTGGCAGGGGTGTGGCTGGTAGCAGCAGCAGTTATATGAGTGGTGGTGGATCTGGGTCTTATTATTGA 2367 0.4487 MPPRVVKRGAAAKRATRGSSKTAPEKQQQQQHEPEAAEVVAVHHEENPVVDVGVEEKPNDVNQLAPEAGTVPNGSAVVENNEGEVKESIDEYEKDEHLDLEDNYPEYEPEEYGGVDYDEKEIEQDEGGQEVGDDVEEEPEENVGEEEGDSGDEEVEYVYEEVEDDNDDEHENGGEEYEHEHDNAQMADVEEAEHREVVKERQKRKEFEVFIGGLDKDATEHDLRKVFSKVGEVTEVRLMINPQTKRNKGFAFLRFETVEQAKRAVAELKNPVINGKQCGVSPSQDSDTLYLGNICKTWKKEALKEKLKRYGVENVEDLTLVEDDNNEGMNRGFAFLEFSSRSDAKEAYKRLQKRDVVFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWDEDYVRDVLKKYGDIEKIELARNMPAARRKNYGFVTFSTHAAAVECADSITSAGLGEGDKKAKVRARLSRPLSKPPHRGKHVNHGGFRSGRNSGSLVRPSQRRPAPRSLPAHVVRGVGSRIPPVRPVGVRNRRSVMSMQERARPVAPPVRSYDRRFTAPAYPKSSGKRDYSRREDLPPPRSRVAADYGSRVASQRHTSYRDYPTRGSDYSEVHRSTSRAAPKRGYIDHGYGQRFERPPPPPHLSYREGRPRDYDTLSGSKRPYAAIDDVPLRYDTGTRQSRSRLDYDYGGSASQYGDAYGDRLGRSSLGYSGSRSSTSNQDLHGTYGSRQGTSYSGGSFGCSDGGMYSSSYGGDYISRGSDVGGRSYSSMYSGRGVAGSSSSYMSGGGSGSYY* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2368 788 MobiDBLite consensus disorder prediction 635 651 - -
Apr4g2368 788 MobiDBLite consensus disorder prediction 466 504 - -
Apr4g2368 788 MobiDBLite consensus disorder prediction 601 616 - -
Apr4g2368 788 MobiDBLite consensus disorder prediction 83 101 - -
Apr4g2368 788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Apr4g2368 788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 386 443 IPR000504 GO:0003723
Apr4g2368 788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 355 IPR000504 GO:0003723
Apr4g2368 788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 371 IPR000504 GO:0003723
Apr4g2368 788 MobiDBLite consensus disorder prediction 1 37 - -
Apr4g2368 788 SMART rrm1_1 288 367 IPR000504 GO:0003723
Apr4g2368 788 SMART rrm1_1 208 281 IPR000504 GO:0003723
Apr4g2368 788 SMART rrm1_1 385 460 IPR000504 GO:0003723
Apr4g2368 788 MobiDBLite consensus disorder prediction 466 480 - -
Apr4g2368 788 MobiDBLite consensus disorder prediction 705 724 - -
Apr4g2368 788 Gene3D - 287 370 IPR012677 -
Apr4g2368 788 MobiDBLite consensus disorder prediction 561 575 - -
Apr4g2368 788 SUPERFAMILY RNA-binding domain, RBD 202 285 IPR035979 GO:0003676
Apr4g2368 788 PANTHER RNA RECOGNITION MOTIF 1 788 - -
Apr4g2368 788 MobiDBLite consensus disorder prediction 102 173 - -
Apr4g2368 788 MobiDBLite consensus disorder prediction 57 185 - -
Apr4g2368 788 MobiDBLite consensus disorder prediction 767 788 - -
Apr4g2368 788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Apr4g2368 788 Gene3D - 376 498 IPR012677 -
Apr4g2368 788 SUPERFAMILY RNA-binding domain, RBD 286 443 IPR035979 GO:0003676
Apr4g2368 788 MobiDBLite consensus disorder prediction 586 600 - -
Apr4g2368 788 MobiDBLite consensus disorder prediction 530 695 - -
Apr4g2368 788 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 788 - -
Apr4g2368 788 Gene3D - 147 282 IPR012677 -
Apr4g2368 788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 384 466 IPR000504 GO:0003723
Apr4g2368 788 CDD RRM_SF 386 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2368 Apr-Chr4 32607920 32614454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2368 159 465 Eukaryotic Initiation Factors Gene Family AT2G23350 20.468 1.06e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2368 - - gmx:100811387 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2368 4 32607920 32614454 Apr4g2368 4 32607920 32614454 ECH