Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2350 ATGGTTGTGAGTAGCCAAATTTTCAGTGCTTGTGTTATTGTTAGTTTCTTTCTGCTGATTATTTGTGGCATGACTTATGGCACTGATAGTGATCTATTCTGCTTGAAAAGTGTGAAACGTTCACTTGAAGACCCCTATAATTATTTGCAATATTGGAATTTCAACAACAAAACAGAAGGGTTTATATGCAAGTTTACTGGGGTTGAATGTTGGCACCCTGATGAGAACAGAGTTTTGAATCTCAAACTGTCCAACATGGGGCTTAAGGGTCAGTTTCCCCGTGGCATTCAAAATTGCTCAAGCTTGACAGGATTAGATTTTTCTCTTAACAGACTCTCTCAAACCATTCCGGCGGATATATCTACCCTTCTTAAATTTGTGACATCTCTTGATCTATCTTCAAATGATTTTACTGGGGACATACCTCTGTCCCTTGCAAACTGTACTTACCTTAATGCTCTTAAACTTGACCAAAACCAACTCACTGGTCAAATTCCTGCACAATTGAGTCAGTTACCGCGGCTTAAGTCATTTATTGTCTCCAATAATCTATTGACAGGGCAAGTTCCAACCTTTAGAAATGGTATAGTTAGTGCAGATAGTTATGCAAATAATTCAGGCCTATGTGGTGGTCCCTTGGAGCCTTGCCAGCCCAAGTCTTCCAAGAGTAACACTGCAGTTATAGCTGGTGCAGCTGTTGGTGGTGTGACTTTTGCAGCATTAGGATTGGCTGTTGGATTGTTCTTTTATGTGCGCCACGTTTCTTATAGGAAAAAGGAAGAGGACCCTGAAGAAAACAAGTGGGCAAGAAGTCTAAAGGGAACTAAAGGAATAAAGGTTTCTATGTTTGAGAAGACAATTTCAAAAATGAACTTGAGTGATCTCATGAAGGGTACTAATAACTTCAGCAAAAGCAATATTATTGGGACAGGAAGATCAGGAACCGTTTACAACGCTGTTCTTGAGGATGGTACATCACTCATGGTTAAGAGATTGCAGGAATCTCAACACTCAGAGAAAGAATTTCTGGCTGAGATGGGTACACTAGGGACTGTCAGACATCGAAACTTGGTTCCTCTTTTAGGGTTTTGCATGGCCAAAAGGGAGAAACTTTTGGTCTATAAAAATATGCCAAATGGTAACCTCTATGATCAACTACATCCTGCTTCTGATGGGTGCAACATGGATTGGTCTCTAAGGCTCAAAATTGCAATTGGAGCAGCCAAAGGATTAGCATGGCTTCATCATAACTGCAATCCTCGCATTATCCACCGAAACATAAGCTCTAAGTGTATATTGTTGGACGTAGATTTTGAGCCCAAAATTTCTGATTTTGGCCTTGCTAGATTGATGAACCCGATTGATACACATTTGAGTACTTTTGTAAATGGGGAGTTTGGTGATTTAGGTTATGTTGCTCCTGAATATACAAAAACTTTGCTGGCTACTCCAAAGGGAGATATTTACAGCTTTGGAACAGTGCTTCTTGAGTTGGTAACAGGTGAAAAAGCTACTCATGTGGCTAAAGCTCCAGAAACTTTTAAAGGAAATTTGGTAGAATGGGTTACACAGCTATCTAGCAACTCAAAACTCCATGACGCCATTGATGAATCACTAATTGGGAAGGGTGTAGATCAGGAGCTTTTCCAATTTCTGAAGGTTGCATGCAACTGTGTTACAGCAGTTCCAAAGGAGAGGCCTACCATGTTTGAAGTATACCAATTTCTAAGAGCCATTGGGAGTAGATATAATTTCACAACTGAGGATGAGATAATGCTACCTACAGACACTGGTGATATTGATAACTTAGAAGAACTTATTGTAGCTCGAGAGGAACATGATTGA 1845 0.4 MVVSSQIFSACVIVSFFLLIICGMTYGTDSDLFCLKSVKRSLEDPYNYLQYWNFNNKTEGFICKFTGVECWHPDENRVLNLKLSNMGLKGQFPRGIQNCSSLTGLDFSLNRLSQTIPADISTLLKFVTSLDLSSNDFTGDIPLSLANCTYLNALKLDQNQLTGQIPAQLSQLPRLKSFIVSNNLLTGQVPTFRNGIVSADSYANNSGLCGGPLEPCQPKSSKSNTAVIAGAAVGGVTFAALGLAVGLFFYVRHVSYRKKEEDPEENKWARSLKGTKGIKVSMFEKTISKMNLSDLMKGTNNFSKSNIIGTGRSGTVYNAVLEDGTSLMVKRLQESQHSEKEFLAEMGTLGTVRHRNLVPLLGFCMAKREKLLVYKNMPNGNLYDQLHPASDGCNMDWSLRLKIAIGAAKGLAWLHHNCNPRIIHRNISSKCILLDVDFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTKTLLATPKGDIYSFGTVLLELVTGEKATHVAKAPETFKGNLVEWVTQLSSNSKLHDAIDESLIGKGVDQELFQFLKVACNCVTAVPKERPTMFEVYQFLRAIGSRYNFTTEDEIMLPTDTGDIDNLEELIVAREEHD* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2350 614 Gene3D Ribonuclease Inhibitor 92 225 IPR032675 -
Apr4g2350 614 Gene3D Ribonuclease Inhibitor 28 91 IPR032675 -
Apr4g2350 614 CDD STKc_IRAK 308 576 - -
Apr4g2350 614 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Apr4g2350 614 SUPERFAMILY Protein kinase-like (PK-like) 280 576 IPR011009 -
Apr4g2350 614 ProSiteProfiles Protein kinase domain profile. 302 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2350 614 Gene3D Transferase(Phosphotransferase) domain 1 377 595 - -
Apr4g2350 614 Pfam Protein tyrosine and serine/threonine kinase 305 575 IPR001245 GO:0004672|GO:0006468
Apr4g2350 614 Gene3D Phosphorylase Kinase; domain 1 264 375 - -
Apr4g2350 614 SUPERFAMILY L domain-like 29 196 - -
Apr4g2350 614 PANTHER RECEPTOR-LIKE PROTEIN 55 5 591 - -
Apr4g2350 614 PANTHER LRR RECEPTOR-LIKE KINASE 5 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2350 Apr-Chr4 32453249 32456350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2350 6 590 Receptor kinase-like Gene Family AT3G28450 46.024 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Apr4g2350 PK_Tyr_Ser-Thr 5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2350 - - gmx:100817267 1019.61