Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2348 ATGGAGGATTCATTGAGGGATTGGGTTTCTCAATTGGAAATGGAAGAACAAGATATGTTGAATAATCAAAGTTTTAGTTCATTTGATGAGCAAGAGTTCTTAAGAGAGATCCTTCAACACCCAGAAAATTTCTCCCCTGAATGGGAGCAATATCCCTCCCCTTGTTGCACAATCCAAAACAATAACATTAGTGTTGAAGGTGGTGCCACAAGCCCCACCAATAGCACTTTGTCCTTTGATGAGACAAGCCTTTGTGGGAATGATGGCACCCTCCACAAAAGTAACAGCTCCAACTCTATCAAGTCTTTGGAGAGATGTGTTTGTTCTCCAGCTGCTTACCTTCTCTCTTTTGATAAATCAACTGCTGAACCAATTATCCATCATTCCCCTAAGCTTAATTCAGCATTTGGATCTAATAAAAGGGCTGTAGTGAAAGATGGGTCTGAATTAGAATCAAGGGTGGGTCAAACAAGAAAGAAAGTTAGAGGGTCATCTGAGACACATGATCACATAATTGCTGAGAGGAAAAGAAGACAGGAACTCACAGGGAGCATCATAGCACTTTCAGCAACAATTCCTGGGCTGAAGAAGACGGACAAGGCTTATGTACTTCGAGAAGCTGTCAATTACACGAAACAACTTAAAGAGCGAATTAAAGAGTTGGAGAATCAAAACAAAGATAAGAGAGTAGATTCAACAATATTCATCAAGAAATCGCAAGCCTCCTCAGATAAGAGCATTGGCAAATGTGAAAAGAACACAGAATCACTATTTGAGGTTGAAGCAAGAGTCCTAGAGAAGGAAGTACTCATTGGAATCCATTGTGAAAAACAAAAGGACATAGTGTTCAAAATACACGTCTTGCTTGAAAAGCTTCATCTCTCTATTACAAGTAGCAGCGCATTGCCATTTGGAACTTCTACTCTTATAATCCACGTTATTGCTCAGATGGGTGATGAATATAGCATGACAATGGATGACCTTGTGAAAAATCTGAGAGAATCTCTGTTAGAGGCATAG 1020 0.398 MEDSLRDWVSQLEMEEQDMLNNQSFSSFDEQEFLREILQHPENFSPEWEQYPSPCCTIQNNNISVEGGATSPTNSTLSFDETSLCGNDGTLHKSNSSNSIKSLERCVCSPAAYLLSFDKSTAEPIIHHSPKLNSAFGSNKRAVVKDGSELESRVGQTRKKVRGSSETHDHIIAERKRRQELTGSIIALSATIPGLKKTDKAYVLREAVNYTKQLKERIKELENQNKDKRVDSTIFIKKSQASSDKSIGKCEKNTESLFEVEARVLEKEVLIGIHCEKQKDIVFKIHVLLEKLHLSITSSSALPFGTSTLIIHVIAQMGDEYSMTMDDLVKNLRESLLEA* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2348 339 Gene3D - 156 230 IPR036638 GO:0046983
Apr4g2348 339 MobiDBLite consensus disorder prediction 149 168 - -
Apr4g2348 339 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 6 338 - -
Apr4g2348 339 Coils Coil 325 339 - -
Apr4g2348 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 229 IPR036638 GO:0046983
Apr4g2348 339 SMART finulus 171 220 IPR011598 GO:0046983
Apr4g2348 339 PANTHER BHLH TRANSCRIPTION FACTOR 6 338 - -
Apr4g2348 339 Pfam Helix-loop-helix DNA-binding domain 170 214 IPR011598 GO:0046983
Apr4g2348 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Apr4g2348 339 Coils Coil 204 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2348 Apr-Chr4 32438336 32440362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2348 111 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.017 1.02e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g2348 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2348 - - aprc:113863851 668.692