Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2347 ATGGAGAATCTATGTGCATACTTGGTTTCTCATGCGGAAATGGGTGATGATGATTTCTTGAATGAAAGCTCTTTTAACGAAGAAGAGTTCCTCAAAGATATTATTGTTGAGCAACCAGTTTTCTCTCATGAAAGTGATAGCCCCTCTTCCAATCCCTCTTCTTCCTCTGTTCAAAGCAACTATAAAATGGTCAAGAGTTGCAACAATTTGAAACCTCACTCATCATCTCCAACTGGGTACATTCTATCTTTTGATAACCCTGTTGATTACTCTGCTTTCATGTGCTCTAAAAGCAGGGCACCAAGCCATTATTGCACTGACCCGCCAACAAAGAAGACTAGAAACTCTTCTGGGACACAAGTACACATTTTGGCTGAGAGGAAAAGGAGACAGGAATTGACTAGAAGCATCATAGCACTTTCAACCATCATACCTAGCTTGAAGAAGACAGACAAGGCCAATGTACTGCGTGAAGCTGTGAATTATGTGAAACAACTTCAAGAACGTGTAAAAGAGCTAGAAAATCAAAGCAAAAAAGAATGTGTGGATTCAATTATACTCATAAAAAAAACACAACTTTGCATAAATGATGAAGCCACTCTCTCATGTGATGGTTGCAATGGATGTATCGTAGAACTCCCTGAGGTGGAAGCAATGGTTTTAGAGAGGGAAGTGCTCATTGGAATCCATTGTGAGAAACAAAAGCATAGTTTCCTCAAAATATTGTCTTTGCTTAGTAATCTCCATCTTTCCATAACCAGTACCAGCATATTGCCATTTGGAACTTCCACTGCTAAAATCACCATTGTTGCACAGATGGATGATGGATACAACATGACAATTGATGATCTAGTAAGAACACTGCGACAACACCTATTGAGTTTGAAGTCACAGGACATGCAAAAGTGA 909 0.3927 MENLCAYLVSHAEMGDDDFLNESSFNEEEFLKDIIVEQPVFSHESDSPSSNPSSSSVQSNYKMVKSCNNLKPHSSSPTGYILSFDNPVDYSAFMCSKSRAPSHYCTDPPTKKTRNSSGTQVHILAERKRRQELTRSIIALSTIIPSLKKTDKANVLREAVNYVKQLQERVKELENQSKKECVDSIILIKKTQLCINDEATLSCDGCNGCIVELPEVEAMVLEREVLIGIHCEKQKHSFLKILSLLSNLHLSITSTSILPFGTSTAKITIVAQMDDGYNMTIDDLVRTLRQHLLSLKSQDMQK* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2347 302 Gene3D - 109 180 IPR036638 GO:0046983
Apr4g2347 302 SMART finulus 123 172 IPR011598 GO:0046983
Apr4g2347 302 ProSiteProfiles ACT domain profile. 226 302 IPR002912 -
Apr4g2347 302 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 21 295 - -
Apr4g2347 302 PANTHER BHLH TRANSCRIPTION FACTOR 21 295 - -
Apr4g2347 302 Coils Coil 156 183 - -
Apr4g2347 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
Apr4g2347 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 177 IPR036638 GO:0046983
Apr4g2347 302 Pfam Helix-loop-helix DNA-binding domain 121 167 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2347 Apr-Chr4 32434809 32437490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2347 113 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.956 1.52e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g2347 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2347 - - gmx:100807144 273.863