Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2334 ATGGGGTCTATGAATTTGTTGGGTTTCTCTCTCTCTCCTCAAGAACACCCTCCTAATCAAGACCATTCTCAAACGGCACCTTCTCGTTTTGGCTTCAACCCTGACGGAATCTCAAGCACTGATGTAGCTGGAGAATGCTTTGATCTCACTTCTGACTCAACTACTCATTCACTCAACCTTCCTCCTTTTGGCATATACGAAGCATTTCACAGGAACAATAATATTCACACCACTCAAGATTGGAAGGAGAACTACAACAGTCAAAACTTGCTTTTGGGAACTTCATGCAGTAACCAAAATATGAACCAGAATCAACATCAACATCAACAACAACAGCCAAAGCTTGAAAACTTCCTGGGTGGACACTCTTTTGGTGATAATCATGAACACCAAGCATACGGTGGTAACTCAGCCTCAACAGATTACATGTTTCCAAACTGTTCATTACAGCTTCCATCTCAGTCTGTAGTGGCTGGTGGCGGTGGTGGTAGTGCAAGCAATGGTAACTCCATAGGGTTGTCCATGATAAAAACATGGCTGAGGAACCAGCCACCACACTCAGAAAGCAACAATAACAACAACAATGAAAGTGGTGGAATTACTAGTAGAACTAGTGTGCAAACACTATCACTTTCCATGAGTACTGGTTCACAATCAAGCTCATCATTGCCCCTTCTCACGGCTAGTGTGGATGGAGAGAGTTCTTCAAATAACAAGCAACCACTCACCACCGTTGCACTTGATACCACCCAAACTGGACCTATTGACACTGCACCCAGAAAGTCCATTGACACGTTTGGACAGAGAACTTCAATCTACCGTGGTGTAACAAGGCATAGGTGGACTGGGAGGTATGAAGCTCACTTGTGGGATAATAGTTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGACAAGTTTACTTGGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACAACAACAAATTTTCCGATTAGCCACTATGAGAAAGAATTGGAAGAAATGAAGCACATGACCAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAGAGTAGTGGCTTTTCGCGCGGTGCATCCATTTATCGAGGAGTTACGAGACACCATCAACATGGTAGATGGCAAGCGAGGATCGGAAGAGTTGCAGGCAACAAAGATCTTTATTTGGGAACTTTCAGCACCCAAGAAGAGGCAGCAGAAGCATATGATGTAGCAGCCATCAAATTCCGAGGATTGAGTGCTGTTACAAACTTTGACATGAGCAGATACGATGTTAAGAGCATACTTGAGAGCACCACATTGCCAATTGGTGGTGCTGCCAAGCGTTTGAAGGATATGGAGCAAGTTGAACTAAATGTGGATGGCCATAGAACAGATCAAGAAGATCATATGATCATGAACTCGCACCTAACTGAGGGAATCAACAACTTTGGAGGAGGATCAACCCATCATAACTGGCATAATGCTCTTGCATTCCACCAACATCAACCTTGTACCACCATACACTACCCTTATGGACAAAGGCTTTGGTGCAAGCAAGAACAACAAGATAATTCTGATTCCTCTCACACTTTGTCTTATCCAGATATTCATCAACTACAGTTAGGGAATAATGGCACACATAATTTCTTTAATACAAATTCTGGGTTGCACACTATCATGAACATTGATTCTTCTTCCATGGACAATAGCTCTGGATCTAACTCGGTTGTTTATGATGGTTATGGAGGTAGTGGGGGCTACGTGATTCCTATGGGAACTACTACTGTAGCTGCAAGTGATGGTAACCAAAATGAAAGAAGCAATAATGGTTTTGGTGATAATGAGATAAAGGTGCTTGGTTATGAAGGTGTTTATGGCTCTACTGATCCTTATCATGCACATGCAAGGAACATGTACTATCTTTCTCAACACCAATCATCTTCTGTAGATGCAGTTAAGACCAGTGCATATGATCAAGGATCCACATGCAATAGTACTTGGGTTCCAACAGCGATTCCAACACTTGCACCAAGGTCTACCAATATGGCACTTTGTCACGGTGCTCCACCATTCACGTTATTGCATGAATAG 2112 0.4299 MGSMNLLGFSLSPQEHPPNQDHSQTAPSRFGFNPDGISSTDVAGECFDLTSDSTTHSLNLPPFGIYEAFHRNNNIHTTQDWKENYNSQNLLLGTSCSNQNMNQNQHQHQQQQPKLENFLGGHSFGDNHEHQAYGGNSASTDYMFPNCSLQLPSQSVVAGGGGGSASNGNSIGLSMIKTWLRNQPPHSESNNNNNNESGGITSRTSVQTLSLSMSTGSQSSSSLPLLTASVDGESSSNNKQPLTTVALDTTQTGPIDTAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEQVELNVDGHRTDQEDHMIMNSHLTEGINNFGGGSTHHNWHNALAFHQHQPCTTIHYPYGQRLWCKQEQQDNSDSSHTLSYPDIHQLQLGNNGTHNFFNTNSGLHTIMNIDSSSMDNSSGSNSVVYDGYGGSGGYVIPMGTTTVAASDGNQNERSNNGFGDNEIKVLGYEGVYGSTDPYHAHARNMYYLSQHQSSSVDAVKTSAYDQGSTCNSTWVPTAIPTLAPRSTNMALCHGAPPFTLLHE* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2334 703 MobiDBLite consensus disorder prediction 1 35 - -
Apr4g2334 703 SUPERFAMILY DNA-binding domain 373 434 IPR016177 GO:0003677
Apr4g2334 703 Pfam AP2 domain 374 424 IPR001471 GO:0003700|GO:0006355
Apr4g2334 703 Pfam AP2 domain 272 330 IPR001471 GO:0003700|GO:0006355
Apr4g2334 703 MobiDBLite consensus disorder prediction 181 241 - -
Apr4g2334 703 CDD AP2 373 434 IPR001471 GO:0003700|GO:0006355
Apr4g2334 703 PANTHER BNAC02G44180D PROTEIN 5 618 - -
Apr4g2334 703 PRINTS Ethylene responsive element binding protein signature 273 284 IPR001471 GO:0003700|GO:0006355
Apr4g2334 703 PRINTS Ethylene responsive element binding protein signature 414 434 IPR001471 GO:0003700|GO:0006355
Apr4g2334 703 SMART rav1_2 374 438 IPR001471 GO:0003700|GO:0006355
Apr4g2334 703 SMART rav1_2 272 344 IPR001471 GO:0003700|GO:0006355
Apr4g2334 703 Gene3D AP2/ERF domain 374 434 IPR036955 GO:0003700|GO:0006355
Apr4g2334 703 Gene3D AP2/ERF domain 272 340 IPR036955 GO:0003700|GO:0006355
Apr4g2334 703 SUPERFAMILY DNA-binding domain 271 340 IPR016177 GO:0003677
Apr4g2334 703 CDD AP2 271 340 IPR001471 GO:0003700|GO:0006355
Apr4g2334 703 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 618 - -
Apr4g2334 703 ProSiteProfiles AP2/ERF domain profile. 272 338 IPR001471 GO:0003700|GO:0006355
Apr4g2334 703 ProSiteProfiles AP2/ERF domain profile. 374 432 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2334 Apr-Chr4 32337157 32341250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2334 170 602 AP2-EREBP Transcription Factor Family AT5G17430 54.853 5.19e-142 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Apr4g2334 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2334 K09285 - gmx:100797584 1093.95