Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2303 ATGGAATTCGATGCTGCGATTCCCGTGTCCCGAGAGCACCTTCCTCAAGATGCAATGTGGCAAATGAACTTGAGGTCCAGTGAAACAATGGAATCAGGACCTTATCCTGAGCATCCAGGAGAACCAGACTGTTCATATTACATCAGAACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAATAGGAAGCTGGCTATTGCCGCTGCAAGGATGAAAGGCGAATTCCCAGAAAGGATAGGACAGCCAGAATGTCAGTACTATTTAAAAACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAAGCTGGGATTGCTGGAAGAGTTGATTTGAATATTTTAGGCTATCCCCTCCGCCCAAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAGTAATATGGTGCTTTCCATGCGAAGTTCTCCTGTTTATCCTACCATCCATTCTCCAACTACACCAGGTCAGCAGTCATATGCAGCAGGAATTACAAATTGGTCCAGTTCATCATATATTCCTAGCCCACGTTGGCAAGCCCCTTCAAGTTATGCACCTTTGATTCTACCTCAGGGAATGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAGACAGTCCTCAGCAAACAATAGGAAATGGTCAAACCTATGGAACTTCTCGGCAAGGTGAACCATCAAACGCAGGATCTCAAGGGGGTTATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGATTCTATCCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAGTTCTACATGAAGACTGGAGATTGCAAATTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATACCTGCTCCTGACTGTGTTTTGAGTCCCATGGGCCTTCCTTTACGTCATGGAGAACCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATATGTCTGCATCACCTTCAGCTGATGCCCAAGGACGGCGACTTGTTGAGTCAGGCTCAGCAAAGCCTAGGAGGCTATCATTATCTGAGACTAGACAGATCGCTTCTGGTGATGATAACATTGATGAAGAGGGATAA 1230 0.4488 MEFDAAIPVSREHLPQDAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRVDLNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRSSPVYPTIHSPTTPGQQSYAAGITNWSSSSYIPSPRWQAPSSYAPLILPQGMVSVPGWSAYSGQMGSDSPQQTIGNGQTYGTSRQGEPSNAGSQGGYSQFRSGSVPVGFYPLQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPMGLPLRHGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNMSASPSADAQGRRLVESGSAKPRRLSLSETRQIASGDDNIDEEG* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2303 409 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Apr4g2303 409 MobiDBLite consensus disorder prediction 375 409 - -
Apr4g2303 409 ProSiteProfiles Zinc finger C3H1-type profile. 332 360 IPR000571 GO:0046872
Apr4g2303 409 MobiDBLite consensus disorder prediction 229 262 - -
Apr4g2303 409 Gene3D - 115 164 - -
Apr4g2303 409 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 11 408 - -
Apr4g2303 409 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Apr4g2303 409 SMART c3hfinal6 286 313 IPR000571 GO:0046872
Apr4g2303 409 SMART c3hfinal6 332 359 IPR000571 GO:0046872
Apr4g2303 409 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Apr4g2303 409 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Apr4g2303 409 SUPERFAMILY CCCH zinc finger 290 315 IPR036855 GO:0046872
Apr4g2303 409 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Apr4g2303 409 Gene3D - 285 365 - -
Apr4g2303 409 Gene3D - 36 114 - -
Apr4g2303 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 335 359 IPR000571 GO:0046872
Apr4g2303 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 288 313 IPR000571 GO:0046872
Apr4g2303 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Apr4g2303 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Apr4g2303 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Apr4g2303 409 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Apr4g2303 409 SUPERFAMILY CCCH zinc finger 333 359 IPR036855 GO:0046872
Apr4g2303 409 SUPERFAMILY CCCH zinc finger 132 157 IPR036855 GO:0046872
Apr4g2303 409 PANTHER PROTEIN PHOSPHATASE RELATED 11 408 - -
Apr4g2303 409 ProSiteProfiles Zinc finger C3H1-type profile. 286 314 IPR000571 GO:0046872
Apr4g2303 409 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Apr4g2303 409 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2303 Apr-Chr4 32103182 32111687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2303 19 406 C2H2 Transcription Factor Family AT3G02830 65.561 2.55e-180 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr4g2303 zf-CCCH 9.7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2303 - - gmx:100786261 825.083