Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr4g2303 | ATGGAATTCGATGCTGCGATTCCCGTGTCCCGAGAGCACCTTCCTCAAGATGCAATGTGGCAAATGAACTTGAGGTCCAGTGAAACAATGGAATCAGGACCTTATCCTGAGCATCCAGGAGAACCAGACTGTTCATATTACATCAGAACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAATAGGAAGCTGGCTATTGCCGCTGCAAGGATGAAAGGCGAATTCCCAGAAAGGATAGGACAGCCAGAATGTCAGTACTATTTAAAAACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAAGCTGGGATTGCTGGAAGAGTTGATTTGAATATTTTAGGCTATCCCCTCCGCCCAAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAGTAATATGGTGCTTTCCATGCGAAGTTCTCCTGTTTATCCTACCATCCATTCTCCAACTACACCAGGTCAGCAGTCATATGCAGCAGGAATTACAAATTGGTCCAGTTCATCATATATTCCTAGCCCACGTTGGCAAGCCCCTTCAAGTTATGCACCTTTGATTCTACCTCAGGGAATGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAGACAGTCCTCAGCAAACAATAGGAAATGGTCAAACCTATGGAACTTCTCGGCAAGGTGAACCATCAAACGCAGGATCTCAAGGGGGTTATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGATTCTATCCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAGTTCTACATGAAGACTGGAGATTGCAAATTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATACCTGCTCCTGACTGTGTTTTGAGTCCCATGGGCCTTCCTTTACGTCATGGAGAACCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATATGTCTGCATCACCTTCAGCTGATGCCCAAGGACGGCGACTTGTTGAGTCAGGCTCAGCAAAGCCTAGGAGGCTATCATTATCTGAGACTAGACAGATCGCTTCTGGTGATGATAACATTGATGAAGAGGGATAA | 1230 | 0.4488 | MEFDAAIPVSREHLPQDAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRVDLNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRSSPVYPTIHSPTTPGQQSYAAGITNWSSSSYIPSPRWQAPSSYAPLILPQGMVSVPGWSAYSGQMGSDSPQQTIGNGQTYGTSRQGEPSNAGSQGGYSQFRSGSVPVGFYPLQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPMGLPLRHGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNMSASPSADAQGRRLVESGSAKPRRLSLSETRQIASGDDNIDEEG* | 410 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr4g2303 | 409 | ProSiteProfiles | Zinc finger C3H1-type profile. | 129 | 157 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | MobiDBLite | consensus disorder prediction | 375 | 409 | - | - | |
Apr4g2303 | 409 | ProSiteProfiles | Zinc finger C3H1-type profile. | 332 | 360 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | MobiDBLite | consensus disorder prediction | 229 | 262 | - | - | |
Apr4g2303 | 409 | Gene3D | - | 115 | 164 | - | - | |
Apr4g2303 | 409 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED | 11 | 408 | - | - | |
Apr4g2303 | 409 | SMART | c3hfinal6 | 38 | 65 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | SMART | c3hfinal6 | 286 | 313 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | SMART | c3hfinal6 | 332 | 359 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | SMART | c3hfinal6 | 83 | 110 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | SMART | c3hfinal6 | 129 | 156 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | SUPERFAMILY | CCCH zinc finger | 290 | 315 | IPR036855 | GO:0046872 | |
Apr4g2303 | 409 | SUPERFAMILY | CCCH zinc finger | 87 | 112 | IPR036855 | GO:0046872 | |
Apr4g2303 | 409 | Gene3D | - | 285 | 365 | - | - | |
Apr4g2303 | 409 | Gene3D | - | 36 | 114 | - | - | |
Apr4g2303 | 409 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 335 | 359 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 288 | 313 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 132 | 156 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 40 | 65 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 86 | 110 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | SUPERFAMILY | CCCH zinc finger | 43 | 66 | IPR036855 | GO:0046872 | |
Apr4g2303 | 409 | SUPERFAMILY | CCCH zinc finger | 333 | 359 | IPR036855 | GO:0046872 | |
Apr4g2303 | 409 | SUPERFAMILY | CCCH zinc finger | 132 | 157 | IPR036855 | GO:0046872 | |
Apr4g2303 | 409 | PANTHER | PROTEIN PHOSPHATASE RELATED | 11 | 408 | - | - | |
Apr4g2303 | 409 | ProSiteProfiles | Zinc finger C3H1-type profile. | 286 | 314 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | ProSiteProfiles | Zinc finger C3H1-type profile. | 83 | 111 | IPR000571 | GO:0046872 | |
Apr4g2303 | 409 | ProSiteProfiles | Zinc finger C3H1-type profile. | 39 | 66 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr4g2303 | Apr-Chr4 | 32103182 | 32111687 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr4g2303 | 19 | 406 | C2H2 Transcription Factor Family | AT3G02830 | 65.561 | 2.55e-180 | 505 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Apr4g2303 | zf-CCCH | 9.7e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr4g2303 | - | - | gmx:100786261 | 825.083 |