Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2297 ATGGTTTCCCTCTCAACCACCCCCTTTTTACCCTTCACTGCAAATAACGCTTCTTCTCCTTCTACTAGATTTCCACCTCCTAATTCCCTCTTTCACAACAAGCACGCTAGGGATCACAGGAAGATTCTCTGTGCCTGCATCGCACCGCCGCAAAACTTCAAGAGCCAAGACTCCTCCGCCATTAATTTCAATGGTTCATCCAACTCAGAACAATTAAGCACGGTGCGGGATTATGGGGATGATTCTGATGTTCTTATTGAGTGTAGAGATGTTTACAAGTCTTTTGGGGAGAAGAAAATCTTAAATGGTGTCAGCTTCAAGATCAGGCATGGTGAAGCTGTTGGAATAATTGGTCCTTCTGGGACTGGCAAATCTACAGTTTTGAAGATTGTTGCAGGACTTCTTGCCCCGGACAAGGGGGAAGTTTACATTCGAGGTAAAAAGAGAGTTGGTTTGGTGAGCGATGATGACATATCTGGGCTTCGTATTGGACTAGTTTTCCAAAGTGCAGCACTGTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGTCTGAGGAACAGATATCAGAGCTTGTCAAGGAAACCTTGGCTGCAGTTGGATTGAAGGGAGTTGAAGATCGATTGCCTTCTGAGTTATCAGGCGGGATGAAAAAACGAGTTGCTTTAGCTCGATCTATCATTTATGACACCACAAGGGAATCAATAGAGCCAGAGGTGCTCTTGTATGATGAACCAACTGCTGGACTTGATCCAATTGCATCTACTGTTGTTGAGGATTTGATTCGCTCTATGCACATAAAAGGACGAGATGCGCGTGGAAAGCCAGGAAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACAATCAAAAGAGCCATTGATAGGTTGTTGTTCCTACATAAGGGAAAGATTGTTTGGGAAGGAATGACTAATGAATTTACAACTTCAACGAATCCAATTGTTCAGCAGTTTGCATCCGGGAGCCTGGATGGTCCTATCAAATACTAG 1041 0.4313 MVSLSTTPFLPFTANNASSPSTRFPPPNSLFHNKHARDHRKILCACIAPPQNFKSQDSSAINFNGSSNSEQLSTVRDYGDDSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIVAGLLAPDKGEVYIRGKKRVGLVSDDDISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMSEEQISELVKETLAAVGLKGVEDRLPSELSGGMKKRVALARSIIYDTTRESIEPEVLLYDEPTAGLDPIASTVVEDLIRSMHIKGRDARGKPGNIASYVVVTHQHSTIKRAIDRLLFLHKGKIVWEGMTNEFTTSTNPIVQQFASGSLDGPIKY* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2297 346 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 86 337 IPR003439 GO:0005524
Apr4g2297 346 ProSitePatterns ABC transporters family signature. 221 235 IPR017871 GO:0005524
Apr4g2297 346 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 11 346 - -
Apr4g2297 346 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 11 346 - -
Apr4g2297 346 Pfam ABC transporter 101 256 IPR003439 GO:0005524
Apr4g2297 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 327 IPR027417 -
Apr4g2297 346 CDD ABC_Org_Solvent_Resistant 86 335 - -
Apr4g2297 346 Gene3D - 74 338 IPR027417 -
Apr4g2297 346 SMART AAA_5 110 314 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2297 Apr-Chr4 32055071 32059660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2297 85 324 Calmodulin-binding Proteins AT2G36910 28.175 1.10e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2297 - - gmx:100789283 621.313