Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2287 ATGGAGCTTCACAAACTCATCATTCTCAACACAATCCTGCTCCTATTATGTATCTTTCCTCACTCATTCAATAGTCAACAAGTGTATCTCAATGGCACTGTCTATGATTGCTCTGTGAACCCTTCTGCATCTAAAGGATACCTTTGCAATGGCCTTCAAAAATCATGCACTTCCTTTTTAGTTTTCAGGTCAAAGCCTCCCTATGATAACCCTGTAAGCATTGCCTACCTTCTTGGCTCTGAAGCATCTACCATAGCCTCAATCAACAACATCTCAAGAGATAACAAGATTCCTTCCAATAAATCAATCATTGTTCCTGTCTTTTGTTCATGTTCTGGAAACATCTATCAGCATAACACACCTTACACTGCCATCAAGAATGACACATACTATGAGTTGGTCAAAGAAACTTTCCAAGGCCTCACCACATGCCAGGCAATGACGGGTCAGAATTACTATGCCCCTATCAACATTTCGATTGGTGCTGAGCTCACAGTTCCAATCCTATGTGCTTGTCCCACAGCAAACCAGGCAGGAAGAGGGGTTACCTCTTTGTTGGTTCACTTGGTGAATTATGGTGACACAGTTAAGTCCATAGGAGAGGCTTATGGTGTTGATGAACAAAGTTTGCTTGAGGCCAATGAATTGTCAGTACCACAAAATGCAAACAGCAGCATTGACATCCTTGCCTTGACACCTATTTTAGTGCCTCTAATAGGGAAGAGTTGCAAAGAGAACCCAGATAAATTCTATTGTAAATGTTTCAATGCAGATGGAAGCTCCAAGGGGCTCTTCTGTGATCAATCTGATGGTAAAAAATTCCCTGCCAAATTGGTTGCTGCATTAGGAGTGGGCATTGGTGCAGGCTTTCTATGTTTGTTTCTTTTGGGGTACAAGTTATATCAATGCATACAGAAAAAGAGACATAATATTTGTAAGGAAAAACTGTTCAGGCAAAATGGTGGCTACTTGTTACTAGAGAAGTTCTCATATTATGGAAAAGGAGAAATGGCAAAGCTTTTCACTGCAGAGGAGCTACAAAGAGCAACAGATAATTACAACAAGAGTAGGTTTCTTGGTCAGGGTGGCTATGGCACAGTGTACAAAGGAATGCTACCAGATGGAACCATAGTTGCAATTAAAAAGTCAAAAGAGATTGAAAGGAACCAGATAGAGACTTTTGTCAATGAAGTGGTCATTTTATCTCAAATTAACCACAGGAACATTGTCAAACTCTTGGGTTGTTGTCTTGAGACAGAAGCTCCATTACTAGTCTATGAATTTATTCCCAACGGAACACTTTCCCATCATATACATAGTAAAGACCATGAATCATCCCTTCCATGGGAATGTCGCCTTAGAATAGCATGTGAGGTTGCTGGAGCATTGACATATATGCATTTTGCAGCTTCAGTTCCTATCTTCCATAGAGACATCAAACCCACCAACATACTCTTGGACAGTAACTACAGTGCTAAAGTGTCTGATTTTGGAACATCAAGATCAGTTCCATTAGATAAGACTCACTTAACCACAGTTGTAGGAGGAACTTTTGGGTACATTGATCCTGAATATTTTCAGTCTAGTCAATTTACAGATAAAAGTGATGTATATAGTTTTGGAGTTGTGCTTGTAGAACTCATAACTGGGAGAAAGCCCATTTCATTCTTATATGATGATGATGAGGGTCAGAATCTGATTGCACAATTCATTTCTTTGATGAAGGAGAGTCAACTTTCTCAAATTTTAGATGCAAAAGTGGTTAAGGAAGCAAGGAAAGATGACATTCTTGCCATTGCAAATCTTGCCATGAGATGCCTGAAACTTAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCAACAGAATTAGAAGCACTGAGAAAGGTACAAAGTTCCTTGCAGATCAACCATGATCATAAGTCAACAAATGACGGAAAATCATTTGAGCACAGTCCTAGTGACATAGTTCAAGAATGTACAGAGGAAAGCATGTCACTGTCCTTGCAACTAGAGTCCATATCTCTCTAG 2031 0.3964 MELHKLIILNTILLLLCIFPHSFNSQQVYLNGTVYDCSVNPSASKGYLCNGLQKSCTSFLVFRSKPPYDNPVSIAYLLGSEASTIASINNISRDNKIPSNKSIIVPVFCSCSGNIYQHNTPYTAIKNDTYYELVKETFQGLTTCQAMTGQNYYAPINISIGAELTVPILCACPTANQAGRGVTSLLVHLVNYGDTVKSIGEAYGVDEQSLLEANELSVPQNANSSIDILALTPILVPLIGKSCKENPDKFYCKCFNADGSSKGLFCDQSDGKKFPAKLVAALGVGIGAGFLCLFLLGYKLYQCIQKKRHNICKEKLFRQNGGYLLLEKFSYYGKGEMAKLFTAEELQRATDNYNKSRFLGQGGYGTVYKGMLPDGTIVAIKKSKEIERNQIETFVNEVVILSQINHRNIVKLLGCCLETEAPLLVYEFIPNGTLSHHIHSKDHESSLPWECRLRIACEVAGALTYMHFAASVPIFHRDIKPTNILLDSNYSAKVSDFGTSRSVPLDKTHLTTVVGGTFGYIDPEYFQSSQFTDKSDVYSFGVVLVELITGRKPISFLYDDDEGQNLIAQFISLMKESQLSQILDAKVVKEARKDDILAIANLAMRCLKLNGKKRPTMKEVSTELEALRKVQSSLQINHDHKSTNDGKSFEHSPSDIVQECTEESMSLSLQLESISL* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2287 676 PANTHER LYSM TYPE RECEPTOR KINASE 27 660 - -
Apr4g2287 676 SMART serkin_6 353 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2287 676 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 660 IPR045274 GO:0007166
Apr4g2287 676 CDD STKc_IRAK 359 627 - -
Apr4g2287 676 Pfam Protein kinase domain 353 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2287 676 MobiDBLite consensus disorder prediction 635 654 - -
Apr4g2287 676 ProSitePatterns Protein kinases ATP-binding region signature. 359 382 IPR017441 GO:0005524
Apr4g2287 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Apr4g2287 676 Gene3D Phosphorylase Kinase; domain 1 330 428 - -
Apr4g2287 676 SUPERFAMILY Protein kinase-like (PK-like) 337 624 IPR011009 -
Apr4g2287 676 Pfam LysM domain 189 220 IPR018392 -
Apr4g2287 676 ProSiteProfiles Protein kinase domain profile. 353 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2287 676 Gene3D Transferase(Phosphotransferase) domain 1 429 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2287 Apr-Chr4 31954060 31956422 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2287 273 628 Receptor kinase-like Gene Family AT1G16130 57.660 1.40e-138 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Apr4g2287 Pkinase 2.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2287 - - gmx:100795455 1107.82