Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2285 ATGTCCTCTTCCTCTTCCATTCCCTCTCCACCCACAACAACCACATACTTCACCAACCTCGGCCTCGGCTACTCCATCGCCATAGCCCTCGCATTCCTCTTCCTCCTCTCCACCCTCCTCCTCTCCTCCTACCTCTGCTGCCGCGCCCACCGCAACCGCCACCGCACCACCGCCGCCACCACCGACGGTCTCGTCCTTCCACGTGTCATCTTCGTCGCCGAAGACGACGATGCCGAGCCTAACGTCGCTGTGGGTCTTGACCAGAGCGTCATAAACTCCTATCCCAGGTTTCAGTTCAGCAGAGACAGGGACACCACACGGAATAATACCACGTGTTCCATTTGTCTCTGTGAGTACAAGGACTCGGAGATGCTGAGGATGATGCCCGAGTGTCGTCATTACTTTCACCTTTGTTGCCTTGATTCGTGGCTCAAACTTAATGGGTCTTGCCCCGTTTGTCGGAACTCGCCCCTCCCAACGCCGTTATCTACGCCGTTGCAAGAGGTGGTTCCGCTTTCTCACTATGCTGCTGATAGAAGACCAAGTACGTGA 552 0.5598 MSSSSSIPSPPTTTTYFTNLGLGYSIAIALAFLFLLSTLLLSSYLCCRAHRNRHRTTAATTDGLVLPRVIFVAEDDDAEPNVAVGLDQSVINSYPRFQFSRDRDTTRNNTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSHYAADRRPST* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2285 183 PANTHER RING-H2 FINGER PROTEIN ATL67 3 180 IPR044289 GO:0016567|GO:0016740
Apr4g2285 183 Pfam Ring finger domain 111 154 IPR001841 -
Apr4g2285 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 158 IPR013083 -
Apr4g2285 183 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Apr4g2285 183 SUPERFAMILY RING/U-box 102 159 - -
Apr4g2285 183 SMART ring_2 112 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2285 Apr-Chr4 31933973 31935513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2285 18 173 C3H Transcription Factor Family AT5G07040 43.949 1.06e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2285 - - gmx:100793332 233.802