Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2280 ATGGAAAGCCAAGACCCACCAAACCCACCACCACCTCCATTAATGCTACCACCCCAAAACCAAAACAACCCTTTTCTCTTCACGCCTTCAATGTTGCAAAACCCTCTGGACATCCAAGATCAAGGGCTCTCTGACATTGATTGGAGTAACCTTTTCTCTACCCAAAATAGCTTATTGCTTAATGCGGATGCTAAGGACACCATTGAATGCGCTTCTTCGTCTTCTTTCATGGCTGAAAACAATGGAGCTCCTGAAGAGGAAAAGGGGAATAAGGAGAAAAGGAAGGGGGGGAGAATGAAGAGGACCACACGAGTTCCAAGGTTTGCGTTTCAAACAAGAAGTGCAGATGATATTTTAGATGATGGTTATCGTTGGAGGAAATATGGGCAAAAAGCTGTGAAGAATAGCACATATCCCAGAAGCTATTACCGCTGCACTCATCACACATGCAATGTGAAGAAACAAGTGCAAAGGCTATCCAAAGACACAAGCATTGTGGTGACGACATACGAGGGAATTCACAATCATCCATGCGAAAAGCTGATGGAAACTCTAACCCCTCTTCTGAAGCAAATACAATTTCTTGCTAGCTTGTAA 597 0.4372 MESQDPPNPPPPPLMLPPQNQNNPFLFTPSMLQNPLDIQDQGLSDIDWSNLFSTQNSLLLNADAKDTIECASSSSFMAENNGAPEEEKGNKEKRKGGRMKRTTRVPRFAFQTRSADDILDDGYRWRKYGQKAVKNSTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLASL* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2280 198 MobiDBLite consensus disorder prediction 1 19 - -
Apr4g2280 198 Pfam WRKY DNA -binding domain 120 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2280 198 MobiDBLite consensus disorder prediction 1 25 - -
Apr4g2280 198 SUPERFAMILY WRKY DNA-binding domain 112 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr4g2280 198 ProSiteProfiles WRKY domain profile. 114 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2280 198 SMART WRKY_cls 119 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2280 198 MobiDBLite consensus disorder prediction 75 101 - -
Apr4g2280 198 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 40 194 - -
Apr4g2280 198 Gene3D WRKY domain 104 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr4g2280 198 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 40 194 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2280 Apr-Chr4 31862114 31864989 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2280 75 198 WRKY Transcription Factor Family AT5G41570 66.935 1.04e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr4g2280 WRKY 2.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2280 - - gmx:100796481 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2280 4 31862114 31864989 Apr4g2280 4 31862114 31864989 ECH