Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2277 ATGGAGGAAGATTGGGATCTACATGCGGTGGTTAGAGGCTGCTCCACCGTTACCTCAACCACTACTTCCTCTGTCTCTTCTTCTTCGTCGTCAGGCTTTGCCTCTTCTTACTTCCATCCTGAAGCATCCTCTGGATTCTCCACCATCTTTGATGGACCCCATGTTTTGTCCCTTTCTCCACACCCCTTTGAAGCAAGGAGTTCCATTGAGGAGTTGCATGAGCTTTGCAAGCCTTTCTTCTCTTCCAAATCACAGTCTCTCTCCTTGCAAGCTTCTTCTCCCTTGTCCTCATTCTCTTATTCCTCCGCTCCACCCAAATCAGCTCCTGCACAAGAGAAACAACACCAGCGGAACAAGCAGCCACATACAAGTGGTTCTGCCAGCACCCCACGATCTAAAAGAAGGAAGAACCAGCTTAAGAAAGTTTGCCAAGTGCCAGTTGAGAATCTCTCCTCAGACATATGGGCGTGGAGGAAATATGGACAGAAACCCATAAAAGGGTCACCATATCCTAGGGGATACTATAGATGTAGCAGCTCAAAAGGGTGTTTGGCAAGGAAACAGGTTGAGAGGAACAGATCAGACCCAACAATGTTTATTGTCACTTACACAGCTGAACACAACCACCCTGCTCCTACTCACAGAAACTCTCTTGCTGGCTCCACCCGCCAGAAGCCTCAAGCTGCTACCACCATAGACTCTGACAAGACTCTTACTAAACCCACTTCTCCAGCCACCTCAGTGGCTGAGGAAGAGGTTCCAACTCAGGGAGAGAAGTCAGAGAGCAGAGAAGAGAAGGAGGATGTGATGGATGATGAGGAAGGAGATGATGAATTTGGATTGTCTGATATGGTTCTCACAGATGATTTCTTTGAAAGTTTAGATGAACTAAGTCAACTCACCGGTCCTTCTGTAGTCTCTGGAGATTGCTTCAGTGATCCCTTTTCATCTATTGCATTTCCTGCTTGGGTGGCCAGTGGTGCTGCCACTGCTGGTGGATGTAGCTGA 1008 0.4792 MEEDWDLHAVVRGCSTVTSTTTSSVSSSSSSGFASSYFHPEASSGFSTIFDGPHVLSLSPHPFEARSSIEELHELCKPFFSSKSQSLSLQASSPLSSFSYSSAPPKSAPAQEKQHQRNKQPHTSGSASTPRSKRRKNQLKKVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPQAATTIDSDKTLTKPTSPATSVAEEEVPTQGEKSESREEKEDVMDDEEGDDEFGLSDMVLTDDFFESLDELSQLTGPSVVSGDCFSDPFSSIAFPAWVASGAATAGGCS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2277 335 MobiDBLite consensus disorder prediction 208 280 - -
Apr4g2277 335 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 322 IPR044810 GO:0003700
Apr4g2277 335 SUPERFAMILY WRKY DNA-binding domain 149 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr4g2277 335 SMART WRKY_cls 151 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2277 335 Gene3D WRKY domain 135 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr4g2277 335 ProSiteProfiles WRKY domain profile. 146 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2277 335 MobiDBLite consensus disorder prediction 98 143 - -
Apr4g2277 335 Pfam WRKY DNA -binding domain 153 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2277 335 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 322 - -
Apr4g2277 335 MobiDBLite consensus disorder prediction 209 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2277 Apr-Chr4 31843455 31845442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2277 1 333 WRKY Transcription Factor Family AT4G01250 46.552 8.57e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr4g2277 WRKY 3.2e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2277 4 31843455 31845442 Apr6g0635 6 9316442 9317982 ECH
Apr4g2277 4 31843455 31845442 Apr4g2277 4 31843455 31845442 ECH
Apr10g1292 10 25202946 25204662 Apr4g2277 4 31843455 31845442 ECH
Apr2g1236 2 18598087 18599336 Apr4g2277 4 31843455 31845442 ECH
Apr4g2277 4 31843455 31845442 Apr10g1292 10 25202946 25204662 PCT