Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2273 ATGGTGTCCCTCAACCCAAACCCACCTCAACCCTTTCACTTCTTCGACCCCATCATCAACATGGAGGATCCCAATAAGAAGATCCGAAAACCTTATACAATAACCAAGTCCAGAGAAAACTGGACAGACCAAGAACATGACAAGTTTCTTGAAGCTCTTCACTTATTCGATCGTGACTGGAAGAAGATTGAAGCATTTGTTGGTTCAAAAACTGTTATCCAGATAAGAAGTCATGCGCAGAAGAAGTATTTCCTGAAAGTTCAGAAGAATGGCACAAGTGAGCATGTACCTCCCCCTCGTCCAAAGAGAAAAGCTGCTCACCCATACCCACAAAAAGCTTCTAAAAATGCTCCTACTATATCCCAAGTAACTGGGCCATTACAATCTTCATCTGCTTTATCTGAATCATCATACATTTATAGGCCAGATTCATCATCTGTGCTTAGAACTCCAGTTAGCAGTGTGTCTTTGCCATCGTGGGGCTACAATGTTACGCCACCAGTCAATCTTCCACAAGTGACTAAAGATGATATGGTGTTGAATCAACAAACTATTCCTCTCAATTATTGCTGTAGCAGTAGTAATGAGAGTACTCCTAGGACTCGGCCAAGTAGCAAACAGACAAACCAGGGTGACCAAGGCAAGCTGATTAAAGTAATGCCAGATTTTGCACAAGTCTACAGCTTCATTGGCAGTGTATTTGATCCAAATGCAACTAATCATCTACAAACGCTTAAACAAATGGACCCAATAAATGTGGAAACTGTATTGCTCCTGATGAGAAACCTCTCCACCAATTTAACGAGTCCTGAATTTGAGAATGATAGAAAGTTGCTGTCTTCATACAACGCTAACTCGGAGAAGGCAAATTCTGGTAGTCATTGCAGCCAACCCCTCACTGACATATCAGAGAGTGCTATCTTATCTGCTTAA 933 0.4169 MVSLNPNPPQPFHFFDPIINMEDPNKKIRKPYTITKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNAPTISQVTGPLQSSSALSESSYIYRPDSSSVLRTPVSSVSLPSWGYNVTPPVNLPQVTKDDMVLNQQTIPLNYCCSSSNESTPRTRPSSKQTNQGDQGKLIKVMPDFAQVYSFIGSVFDPNATNHLQTLKQMDPINVETVLLLMRNLSTNLTSPEFENDRKLLSSYNANSEKANSGSHCSQPLTDISESAILSA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2273 310 Pfam Myb-like DNA-binding domain 38 81 IPR001005 -
Apr4g2273 310 PANTHER SWI/SNF COMPLEX-RELATED 8 301 - -
Apr4g2273 310 MobiDBLite consensus disorder prediction 89 125 - -
Apr4g2273 310 MobiDBLite consensus disorder prediction 190 214 - -
Apr4g2273 310 SMART sant 37 85 IPR001005 -
Apr4g2273 310 SUPERFAMILY Homeodomain-like 32 87 IPR009057 -
Apr4g2273 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 36 86 IPR006447 GO:0003677
Apr4g2273 310 Gene3D - 40 88 - -
Apr4g2273 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 87 IPR017930 -
Apr4g2273 310 PANTHER MYB TRANSCRIPTION FACTOR 8 301 - -
Apr4g2273 310 CDD SANT 40 81 IPR001005 -
Apr4g2273 310 ProSiteProfiles SANT domain profile. 36 90 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2273 Apr-Chr4 31777562 31782804 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr4g2273 Myb_DNA-binding 6.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2273 - - gmx:100791774 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2273 4 31777562 31782804 Apr4g2273 4 31777562 31782804 ECH
Apr10g1299 10 25306000 25312886 Apr4g2273 4 31777562 31782804 ECH
Apr4g2273 4 31777562 31782804 Apr10g1299 10 25306000 25312886 PCT