Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2265 ATGGTGGAGGAGATCCAGCGAGTCATCGAATCGGTGGTGCAATTCGGCGAATACCGAAGGACGCAGAGAAAGGAAAGCCACAACCTCGTGCGTCGTTTCAAGCTTATGCTTCCGCTCCTTGAAGACCTTCGCGACATTCCCCAACCCTTTCCCCAAAACGGCATAGTTTGGTTAACCAAACTCAAGGACGCGCTTTTATCTGCCAAGGACTTGTTGAAATTGTGCAGCCAAGGAAGCAAGATTCACCTCGCAATGGAGTGCGAGTCCGTTATGATTAGGTTTCAGAGTGTGTATGACAAATTAAGCCAAGCATTTGATGGTGTGCCTTGTGATGAATTGGGGATCTCCGATGAAGTTAAAGAACAGCTTGAGCTAATGCACGTGCAACTGAGGCGAGCCAGAAGAAGAACTGATACACAGGACATAGAACTTGCAATGGATATGATGGTGGTATTTTCTGAAGAGGATGATAGAAATGCTGATAGTGCTATTATTGAAAGGCTAGCAATAAAGCTGGAGCTTCATAGTGTTGAGGATCTTATTGTAGAAACAATGGCTATTAAGAACCTTGCTGCAGAAAGAAAAGGGCAACATGCTGAGAGTACCAAGCGAATAATTGGCCTTCTTAACAAATTCAAACGAATTTCAGGAATGGAAGAAACCAATGTCCTTGATGATCCAACCACACCCAAGACGCTTGAGAGGTCTACATCTTTGGTCATCCCTCATGAGTTTCTCTGCCCAATAACTCTAGAAATCATGACAGATCCTGTTATTGTTGCAAGTGGACAGACATATGAAAGAGAAAGCATAGAGAAGTGGTTCCAGTCAAACCATAACACCTGCCCAAAGACTAGGCAAACTTTGGCTCACCTATCATTAGCACCAAACTGTGCATTAAAAAACTTGATTGAAGAATGGTGTGAGAAAAACAACTTCAAACTACCTAAAAAATATTCTGCTTCTTGTCAAGAAAGCTGTTCCATTGAGAACAAAGATGAAATTCCATCTTTGGTGGAGAGCCTATCGTCTATTCATTTAGAAGAGCAGAGAAAGGCAGTGGAGAAAATACGTATGCTATCAAAGGAGAATCCTGAGAACAGGATTTTGGTTGCTGAACACGGAGGAATACCACCATTAGTTCTACTCCTATCCTACCCAGATTCAAAAATACAGGAACATGCTGTGACAGCACTTTTAAATTTATCAATTGATGAGGGTAACAAGAAACTTATATCTAAAGAAGGTGCCATTCCAGCTATTATAGAAGTGTTGGAGAATGGGAGTTGTGTGGCTAAAGAAAACTCAGCAGCAGCATTATTTAGCTTGTCAATGCTTGATGAAAATAAAGAAATTGTGGGTCAATCAAATGGGTTCCCTCCTTTGGTGGATTTATTGAGGAATGGAACAATTAGAGGGAAGAAAGATGCTGCTACAGCACTTTTTAACTTATCCTTAAACCATGCAAATAAAGGTAGAGCCATTAGAGCTGGTATTGTGACACCCTTACTTCAATTGCTTAAGGACATTAACTTGGGTATGATTGATGAAGCTCTCTCCATTTTGTTACTCCTTGTATCAAATTCAGAAGGAAGACAAGAGATTGGACAACTCTCCTTCATTGAAACACTTGTTGAGTTCATGCGAGAAGGAAGTCCAAAGAACAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGTTCAAATAATTCATCTTTTATATTGGCAGCACTTCAGTTTGGAGTGTATGAGCATTTAACTGAGATCAAACAAAATGGAACAGATAGAGCAAAGAGGAAAGCAATTGCAACCTTAGATCTCATAAGCAGAAGCGAGCAAATTTAA 1845 0.407 MVEEIQRVIESVVQFGEYRRTQRKESHNLVRRFKLMLPLLEDLRDIPQPFPQNGIVWLTKLKDALLSAKDLLKLCSQGSKIHLAMECESVMIRFQSVYDKLSQAFDGVPCDELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSEEDDRNADSAIIERLAIKLELHSVEDLIVETMAIKNLAAERKGQHAESTKRIIGLLNKFKRISGMEETNVLDDPTTPKTLERSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFQSNHNTCPKTRQTLAHLSLAPNCALKNLIEEWCEKNNFKLPKKYSASCQESCSIENKDEIPSLVESLSSIHLEEQRKAVEKIRMLSKENPENRILVAEHGGIPPLVLLLSYPDSKIQEHAVTALLNLSIDEGNKKLISKEGAIPAIIEVLENGSCVAKENSAAALFSLSMLDENKEIVGQSNGFPPLVDLLRNGTIRGKKDAATALFNLSLNHANKGRAIRAGIVTPLLQLLKDINLGMIDEALSILLLLVSNSEGRQEIGQLSFIETLVEFMREGSPKNKECAASVLLELCSNNSSFILAALQFGVYEHLTEIKQNGTDRAKRKAIATLDLISRSEQI* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2265 614 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
Apr4g2265 614 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 2 612 - -
Apr4g2265 614 Pfam Armadillo/beta-catenin-like repeat 364 403 IPR000225 GO:0005515
Apr4g2265 614 Pfam Armadillo/beta-catenin-like repeat 447 485 IPR000225 GO:0005515
Apr4g2265 614 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515
Apr4g2265 614 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Apr4g2265 614 SUPERFAMILY RING/U-box 239 316 - -
Apr4g2265 614 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Apr4g2265 614 Gene3D - 1 109 IPR036537 GO:0007166
Apr4g2265 614 SUPERFAMILY ARM repeat 332 611 IPR016024 -
Apr4g2265 614 SMART arm_5 528 568 IPR000225 GO:0005515
Apr4g2265 614 SMART arm_5 446 486 IPR000225 GO:0005515
Apr4g2265 614 SMART arm_5 405 445 IPR000225 GO:0005515
Apr4g2265 614 SMART arm_5 487 527 IPR000225 GO:0005515
Apr4g2265 614 SMART arm_5 364 404 IPR000225 GO:0005515
Apr4g2265 614 Pfam U-box domain 241 311 IPR003613 GO:0004842|GO:0016567
Apr4g2265 614 Coils Coil 116 136 - -
Apr4g2265 614 PANTHER U BOX DOMAIN-CONTAINING 2 612 - -
Apr4g2265 614 Gene3D - 314 613 IPR011989 -
Apr4g2265 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 313 IPR013083 -
Apr4g2265 614 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 457 499 IPR000225 GO:0005515
Apr4g2265 614 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2265 Apr-Chr4 31687747 31690349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2265 1 614 U-box Gene Family AT5G42340 64.007 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2265 - - gmx:100777362 1044.26