Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2261 ATGGAAGGTGCCTCTTCTTCTTCTTATAGTTCAACTTCCACCCCACCAGGGTCATGGACTTACCATGTGTTTTTGAGTTTTAGAGGAGAAGACACTCGTAAAGGATTTACTGATCATTTGTGTGCTTCACTTGAGAGAAAAGGAATCACAACATTCAGGGATGACAAAGACCTTGAGAGAGGACATGTCATTTCACAACGCCTCCTCAAAGCAATTGAACAATCTATGTTTGCAATCATAATTCTCTCACCAAACTATGCTTCTTCTACTTGGTGTTTGGATGAACTCCAAAAGATTGTAGAATGTAAGAAGAACCAGGATCTACAAGTCTTGCCAGTCTTCTATGGTGTGGACCCCTCTAATGTGAGGCATCAGAGAGAGAGCTTTGAGGAAGCTTTCAAAATGCATGAGGAGAAATTTGGACAAGACAGTGAGAAAGTTACAAAATGGAGACATGCATTAAGACAAGTTGCGGGTTACTCTGGTTGGGACTCCAAGGATCGGCACGAGGCAGCACTAGTAGAAAGCATTGCTCAACACATACATAAAAAGCTGATTCCTAAATTGCCATCTTGCACTGATAACCTTGTTGGGATTGATTCAAGAGTGGAGGAAGTGAACAAGCTCATAGGTATGGGGTTGAATGATGTTCGCTTTATAGGCATATGGGGCATGGGTGGCATAGGAAAGACAACTATTTCTAGAGCAGTCTATGAAGCCATCCAAGGTAACTTCGAAGTTAGTTGCTTCCTTGAAAACGTTAGAGAGGTATCTGAGACAAATGGTTTATTTCACATGCAAAGACAACTTCTTTCTCGTTTAAATATTAGTAGTGGTGATTTTTATGATTTATATGATGGGAAAAAGATAATATGTAACTCTTTATGCAAAAAAAAGGTTCTTCTTGTTCTTGATGATGTAAATGAAGCGAACCAATTGGAGAATTTGGCTGGTAAGCAAGATTGGTTTGGTCCTGGAAGCAGAGTAATAATCACAACTAGAGATATGCACCTGCTAATGACACATGGAGTGCATAAAATTTATGAGGTTGGAAGATTATTCCACAATGAAGCCTTGCATCTCTTTTGTTTGAAAGCCTTTAAACAAGATCAACCTGAAGAAGGGTACTTGGATTTGTCCAAAGAAGTGGTTGAATATACTAGAGGACTTCCATTGGCAATTGAGGTGTTGGGTTCCTATCTTTTTGGAAGAAATGTTGACATTTGGCACAGTGCAGTAAAAAAAATAAGGAGTGTTCCACACCCCAAAATTCAAGATAAACTGAAAATAAGTTATGAGGGTTTAGATTCCATGGAAAAGAATATTTTTCTAGATATAGCCTGTTTCTTCAAAGGAATGAGGTTAGATAAATTGATAAATATGTTAGAAAATTGCGGTTATTGTCCCCGAATTGGAATTGAAATTTTGATTGAAAGATCTTTGGTAACTCTTGATCGATTGAATAATAAATTGGGGATGCATGATTTGCTTCAAGAAATGGGCAGGAATATTGTATTTCAAGAATCTCCAAATGATCCTGGCCAACGCAGCAGGTTGTGGTCTCAAGAGGACATTGATCAAGTGTTGACAATGAACAAGGGAACTGAAGCAATAAACGGTATACTTCTGAAACTCAAACCATATAGAGCACGCTGGAGCACTGAAGCCTTCTCAAAGACAACTCAGCTAAAGTTTCTCAGTTTGTGTGGCATGCAACTTCCCCTTGGTCTCAGCTGTCTTCCTAGTTCCTTAAAAGTTCTTCACTGGAGAGGATATCCTTTAAAAACATTGCCACTAATACATGAACTCAATGAAATTGTTGACATCATATTGTCTCATAGTGAAATTGAACAACTTTGGCAAGGAATACTGTTTATGGAAAAGCTGAAGTACCTGAATTTGACATTCTCCAAGAACCTAAAGCGGTTGCCTAATTTTTCTGGGGTTCCAAATCTTGAAAAGTTAGTTCTTAAAGGTTGTGCAAGCCTAACTGAGGTTCATCCATCCCTTGTACACCATGAGAAAGTTGTTCTAATTAATTTAGAAGACTGCAAAAGTCTTAAAGCTCTTCCAGCTAAATTGGATATGAGTTCCCTGAAGGAGCTTATTCTTTCTGGGTGTTCTGAATTTAAATGTCTTCCAGATTTTGGGGAAAGGATGGAACATCTATCAGTGCTTGCGTTAGAGGGAACAGCTATAAGAAAACTACCCTCATCACTTGGATGCCTAGTTGGCCTTGAAATTTTGAACTTGAAGGATTGCAAAAGTCTACTATGCCTTCCTGACACCATTCATGGATTGAATTCTCTCAGAATTCTGAATATTTCTGGGTGCTCAAAGCTTTGCAGAATGCCAGAGGGTTTAAAGGAAATCAAGTGTTTGGAGGAACTCTATGCCAGTGATACTGCTATTCAAGAACTACCTTCGTTCATCTTGCATTTGGATGGTCTTAAAGCATTATCATTTGCTAGGTGCAAAGGACCATTGTCCAAGTCAATGAATTGGTTTCTTCCCTTCAATTGGATGTTTGGGAATCAACCAACTCCCACTGGATTCAGATTACCACCTTCTGCCTCAAGTCTTCCCTCCTTGAAATATATTAATTTAAGTTACTGCAATCTATCTGAAGAATCAATCCCACGTGACTTTTTCCACTTATCATCACTGAAGTCCTTGGATCTAACTGGTAACAATTTTGTTAGTATACCAAGCAGCATTTCTAAACTTTCAAAGCTGAAATTTCTTACGCTAAATTGGTGCAAAAAGCTTCAATTGTTGCCTGAGCTTCCATCAAGTATAATACAATTGGATGCAAGTAATTGTGATTCATTAGAAACTTCCCAATTCAATCCATCAAAGCCATGTAGTCTCTTTGCATCACCTATAGAAACTGGCTTACCCGAAGAATTTAGGAGTTTTATTGAGGGACGTTGTCTTCCCACTGCAAGATTTGACATGCTTATCCCAGGAACCGAAATCCCATCTTGGTTTGTCCCTCAAGAATGTGTTTCCTGGGCAAAAGTACAAGCCCCTACCAATTGCCTGCTTGATGATTGGGTAGGATTTGCTCTGTGTTTCCTAATAGTAAGTTATTCTATTCCACCTGAATTGTGCAATCATGAAATTGAATGCTATTTGTTTGGACCTAAAGGTAAGATGTTGGTCAGCACTAGGAGATTACCTCCTATGGATCCATGTTATCCTCACCTTTATATTCTCTATTTGTCCATTGATCAATTCCGTGATAAAATTCTTGAAGATGATTACTGGAATGAAATTGAATTTGCATTGAAATGTTATTGCTGTGATTCATTGCAAAAAGTGAGATGTGGGAGTCGTTTGGTGTGTAAGCAAGATGTTGAAGATTGGACAAACGCAATTAGTCAAATAAATAAGAGTTGA 3402 0.3845 MEGASSSSYSSTSTPPGSWTYHVFLSFRGEDTRKGFTDHLCASLERKGITTFRDDKDLERGHVISQRLLKAIEQSMFAIIILSPNYASSTWCLDELQKIVECKKNQDLQVLPVFYGVDPSNVRHQRESFEEAFKMHEEKFGQDSEKVTKWRHALRQVAGYSGWDSKDRHEAALVESIAQHIHKKLIPKLPSCTDNLVGIDSRVEEVNKLIGMGLNDVRFIGIWGMGGIGKTTISRAVYEAIQGNFEVSCFLENVREVSETNGLFHMQRQLLSRLNISSGDFYDLYDGKKIICNSLCKKKVLLVLDDVNEANQLENLAGKQDWFGPGSRVIITTRDMHLLMTHGVHKIYEVGRLFHNEALHLFCLKAFKQDQPEEGYLDLSKEVVEYTRGLPLAIEVLGSYLFGRNVDIWHSAVKKIRSVPHPKIQDKLKISYEGLDSMEKNIFLDIACFFKGMRLDKLINMLENCGYCPRIGIEILIERSLVTLDRLNNKLGMHDLLQEMGRNIVFQESPNDPGQRSRLWSQEDIDQVLTMNKGTEAINGILLKLKPYRARWSTEAFSKTTQLKFLSLCGMQLPLGLSCLPSSLKVLHWRGYPLKTLPLIHELNEIVDIILSHSEIEQLWQGILFMEKLKYLNLTFSKNLKRLPNFSGVPNLEKLVLKGCASLTEVHPSLVHHEKVVLINLEDCKSLKALPAKLDMSSLKELILSGCSEFKCLPDFGERMEHLSVLALEGTAIRKLPSSLGCLVGLEILNLKDCKSLLCLPDTIHGLNSLRILNISGCSKLCRMPEGLKEIKCLEELYASDTAIQELPSFILHLDGLKALSFARCKGPLSKSMNWFLPFNWMFGNQPTPTGFRLPPSASSLPSLKYINLSYCNLSEESIPRDFFHLSSLKSLDLTGNNFVSIPSSISKLSKLKFLTLNWCKKLQLLPELPSSIIQLDASNCDSLETSQFNPSKPCSLFASPIETGLPEEFRSFIEGRCLPTARFDMLIPGTEIPSWFVPQECVSWAKVQAPTNCLLDDWVGFALCFLIVSYSIPPELCNHEIECYLFGPKGKMLVSTRRLPPMDPCYPHLYILYLSIDQFRDKILEDDYWNEIEFALKCYCCDSLQKVRCGSRLVCKQDVEDWTNAISQINKS* 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2261 1133 Pfam C-JID domain 988 1121 IPR045344 -
Apr4g2261 1133 ProSiteProfiles Leucine-rich repeat profile. 888 909 IPR001611 GO:0005515
Apr4g2261 1133 SUPERFAMILY L domain-like 854 942 - -
Apr4g2261 1133 Pfam Leucine rich repeat 862 920 IPR001611 GO:0005515
Apr4g2261 1133 Gene3D Ribonuclease Inhibitor 550 715 IPR032675 -
Apr4g2261 1133 Gene3D Ribonuclease Inhibitor 716 958 IPR032675 -
Apr4g2261 1133 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 764 - -
Apr4g2261 1133 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 734 1070 - -
Apr4g2261 1133 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 163 IPR035897 -
Apr4g2261 1133 Pfam TIR domain 21 198 IPR000157 GO:0007165
Apr4g2261 1133 Gene3D - 184 347 IPR027417 -
Apr4g2261 1133 Pfam NB-ARC domain 207 431 IPR002182 GO:0043531
Apr4g2261 1133 PRINTS Disease resistance protein signature 219 234 - -
Apr4g2261 1133 PRINTS Disease resistance protein signature 294 308 - -
Apr4g2261 1133 PRINTS Disease resistance protein signature 387 401 - -
Apr4g2261 1133 PRINTS Disease resistance protein signature 765 781 - -
Apr4g2261 1133 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
Apr4g2261 1133 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 734 1070 IPR044974 GO:0006952
Apr4g2261 1133 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 764 IPR044974 GO:0006952
Apr4g2261 1133 Gene3D - 353 436 IPR042197 -
Apr4g2261 1133 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Apr4g2261 1133 SUPERFAMILY L domain-like 548 825 - -
Apr4g2261 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 446 IPR027417 -
Apr4g2261 1133 SMART till_3 20 160 IPR000157 GO:0007165
Apr4g2261 1133 Gene3D - 16 183 IPR035897 -
Apr4g2261 1133 SMART LRR_typ_2 720 743 IPR003591 -
Apr4g2261 1133 SMART LRR_typ_2 861 885 IPR003591 -
Apr4g2261 1133 SMART LRR_typ_2 886 909 IPR003591 -
Apr4g2261 1133 SMART LRR_typ_2 791 814 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2261 Apr-Chr4 31659593 31664586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2261 18 823 WRKY Transcription Factor Family AT4G12020 32.767 9.38e-113 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2261 - - gmx:100815486 1541.94