LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr4g2260	ATGGCATCCATGGTAAGTGAAGACTCTTCATATTCCTCTCCTTCAATAGCTACTTTGACTCCACGAACATGGAACTACGACGTGTTTATGAGCTTTAGGGGAGAAGATACTCGTAGAGGTTTCGCTGATCATCTCTATGCTTCGCTTGAAAGAAAAGGAATCAAAACATTCAAGGATGAGAAAGATCTTGAGAGAGGAGGAGTGATTTCACGTGAACTTTTGAAAGCAATTGAAGAGTCTATGTTTGCTATTATTATCCTTTCACCAAACTATGCTTTCTCCACTTGGTGTTTGGATGAGCTACAAAAGATTGTTGAGTGCTCTGATAACTTGGGTCTAGTAGTTGTGCCAATCTTCTACGGTGTAGACCCTTCAGATGTGAGGCACCAAAGAGGAAGCTTTGCAAAAGCTTTTAGAAAACACGAAGAAAATTTTCAACAAGACATCGCCAAAGTTGAAAAATGGAAGATTTCCTTAAGACGAGTCACAGGTTATTCTGGTTGGGACTCTAAGGATTGGTATGAGGCAGCACTTGTTGAAAGCATTACTCAAGACATACATAAAAAGCTTATTCCAAAATTGCCATCTTGTAGTACTAACCTTGTTGGAATTGCTTTAAGGGTGGAGCAAGTGAAGAGGCTCATAGGTATGGGGTTGAATGATGTCCGCTTTATTGGCATATGGGGCACAAGTGGCATAGGTAAGACAACAATTGCTAGAGTAGTCTATGAAGCAATCCAAGGTGATTTTGAAGTTACTTGCTTCCTTGCCAATGTTAGAGAGCTATGTGAGGCAAATGGTTTGGTTCACATTCAAAATGAACTTGCTTCTCATCTAAATTTAAGTACTAGTGACTTTTGTAACGTGTATGATGGGAAGAAGGCACTAAGAGACTCCTTATGCAACAAAGAGGCTCTTCTTGTTCTTGATGATGTAAGTGATGTAAGTCAATTAGAGTGTTTGGCTGGAAATCTAGATTGGTTTGGTCCAGGAAGTAGAATAATAATCACAACTAGAGATATGCATCTACTAAGGATACATGAAGTACACAACACTTATAAAGTTGGATGCTTAGTCCAAAATGAAGCCCTTCACCTCTTTTCCATGAAGGCCTTTAAACAAGGTCAACCTGAAGAAAGGTATTTGGATTTGTCCAAAGAAGTGGTTAAATATACTGGAGGTCTTCCATTGGCACTTGAGGTATTGGGTTCCTATCTATATGGAAGAACCATTGATTTTTGGGATGATGCCTTAAAACATATAAGAAGTTATCCCTACCTCAAAATTGAAGATACACTAAAAATAAGTTATGAGGGTTTGAATCCCCCAGAGAAAAATTTGTTTCTAGATATTGCTTGTTTTTTCAAAGGAATGAATAGAAGTATATTAGAACATTGCGGTCATTGTCCTAATAGAGAAAATATTGATGTTTTGATTGAAAAATCTTTTGTAACTATAGAAAAGGGGAGTGATAAGTTGGAGATGCACGATTTGCTTCAAGAACTCGGCAAGAATATCGTATTTCAAGAATCTCCAAATGATCCTGGCAAACGTAGCAGGTTGTGGTCTCAAAGGGACATTGATCATGTGTTTACACAAAATAAGGGAACTGAAGCTACTCAAGGTATAAAATTAAACTTAATTGAACCACATGAAGCGCGGTGGAGCACTAAAGCCTTCACAAAGACAAGTCAACTAAAATTTCTTAATTTAGATGATTTGCAACTTCCTCTGGGCCTGAATTGCCTTCCTAGTTCACTCGAAGTTCTTGAATGGAGAGGATGTTCTTTGAAAACTCTGCCACTTACTGATGAAAAGTATGAATTTTTTAACATTAAATTGTCATATTCCAAAATAGTAAAACTTTGGCATGGAAATAAGCTAATGGAAAAGCTAAAGCATATGGATTTGAGATTTTCCAAGAATCTGAAGCTGCTATCTAATTTTTCTGGGGCTCCAAATCTTGAAACTTTGGATCTTGAAGGCTGTACAAACCTTAGTAAGGTTCATCCATCCCTAATACAACACAAGAAACTTGTTCTACTGAATTTAAAAGACTGCAAAAGTCTCAAATTTCTTCCAGGTGAATTGGAGATGAGTTCCTTGAAGGAGTTAGTTCTAACTGGTTGCTCAAAATTTGAACTTCTTCCAAATGTGGGGAAATGTATGAAAGTTCTATCAAAGCTTTCTTTAGCCGGAACAGCTATAAGAAAATTACCCATATCACTTGGATTTCTAATTGGCCTTGATGTTTTGAACTTAAAGGATTGCAAAAAACTTGTTTGCCTTCCGGTTACCATTCGGGAACTGAAATGCCTCAAAGTCTTGGATATTTCTGGATGCTCAAAGCTCTACAAATTTCCAAAGGGTTTAGGGGAAATGAATTGCTTGAATGAACTTTTAGCTAGTGGGATAGTTATTAAAGTTAATGAATCATCATTTTCAATGAATTCTTGTTATCTTCAACGGCTATTTGATAGTAAACCCATTCCCATTGGGCTCAGATTTCCACCTTCTATCTTGAATCTACCATCATTAAGTGTTGTGGATTTAAGCTACTGCAATTTGTCTGAAGAATCGATCCCACATGATTTTTGCCTCTTCTCATCATTGGTGTTTTTGGATCTAAGTGGTAATAATTTTGTTGACCCACCAAGTTGTATTCCTACACTTTCAAAGCTAGAAATTCTTAAGCTAAATCATTGTGGAAAGCTTCAAAGGTTGCCAGAACTTCCATCGAGTATAAGAGCATTGGATGCAAGCAATTGTCCTTCACTAGAAACTTCCAGATTCAATCCATCCAGTCTCTTTTCATCGCTTGCACGACATCCTCCTAAGGAATTGCTTGTTAGCCGTGCAAGATTTGATATGGTGATCCCAGGGTGTGAAATTCCATCATGGGTTGTGCATCAAGAAAATGGTAGATATGTTTCAGTCCCTCGTGATGAATGTGCAGGAATTACTTTGTGCTTCCTATTAGTAAGTTATGCGGATCCATCTGAGGAGTGCAGTTATTTAGTTGAATGTTCATTGACTGCTTGCACTGCTAAGAAATACAGTGTATACATCAGTGAGAGGAAATTACCTCCTATGGATCTTCCTCACCTTTATATTATCTTTTTGACCCATGATCAATTCAGTGACCAAATTCTCCAAGACCATCGCTTTGGACTCACTAATGTTTCCAGTCTATCAAAGCAAATGGATTTGAACATAGTGAGATGTGGGGCCTGTTTGGTAGATAAGTAG	3249	0.3767	MASMVSEDSSYSSPSIATLTPRTWNYDVFMSFRGEDTRRGFADHLYASLERKGIKTFKDEKDLERGGVISRELLKAIEESMFAIIILSPNYAFSTWCLDELQKIVECSDNLGLVVVPIFYGVDPSDVRHQRGSFAKAFRKHEENFQQDIAKVEKWKISLRRVTGYSGWDSKDWYEAALVESITQDIHKKLIPKLPSCSTNLVGIALRVEQVKRLIGMGLNDVRFIGIWGTSGIGKTTIARVVYEAIQGDFEVTCFLANVRELCEANGLVHIQNELASHLNLSTSDFCNVYDGKKALRDSLCNKEALLVLDDVSDVSQLECLAGNLDWFGPGSRIIITTRDMHLLRIHEVHNTYKVGCLVQNEALHLFSMKAFKQGQPEERYLDLSKEVVKYTGGLPLALEVLGSYLYGRTIDFWDDALKHIRSYPYLKIEDTLKISYEGLNPPEKNLFLDIACFFKGMNRSILEHCGHCPNRENIDVLIEKSFVTIEKGSDKLEMHDLLQELGKNIVFQESPNDPGKRSRLWSQRDIDHVFTQNKGTEATQGIKLNLIEPHEARWSTKAFTKTSQLKFLNLDDLQLPLGLNCLPSSLEVLEWRGCSLKTLPLTDEKYEFFNIKLSYSKIVKLWHGNKLMEKLKHMDLRFSKNLKLLSNFSGAPNLETLDLEGCTNLSKVHPSLIQHKKLVLLNLKDCKSLKFLPGELEMSSLKELVLTGCSKFELLPNVGKCMKVLSKLSLAGTAIRKLPISLGFLIGLDVLNLKDCKKLVCLPVTIRELKCLKVLDISGCSKLYKFPKGLGEMNCLNELLASGIVIKVNESSFSMNSCYLQRLFDSKPIPIGLRFPPSILNLPSLSVVDLSYCNLSEESIPHDFCLFSSLVFLDLSGNNFVDPPSCIPTLSKLEILKLNHCGKLQRLPELPSSIRALDASNCPSLETSRFNPSSLFSSLARHPPKELLVSRARFDMVIPGCEIPSWVVHQENGRYVSVPRDECAGITLCFLLVSYADPSEECSYLVECSLTACTAKKYSVYISERKLPPMDLPHLYIIFLTHDQFSDQILQDHRFGLTNVSSLSKQMDLNIVRCGACLVDK*	1083

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr4g2260	1082	SUPERFAMILY	L domain-like	508	929	-	-
	Apr4g2260	1082	SUPERFAMILY	Toll/Interleukin receptor TIR domain	20	168	IPR035897	-
	Apr4g2260	1082	Gene3D	-	20	190	IPR035897	-
	Apr4g2260	1082	ProSiteProfiles	TIR domain profile.	24	190	IPR000157	GO:0007165
	Apr4g2260	1082	PRINTS	Disease resistance protein signature	224	239	-	-
	Apr4g2260	1082	PRINTS	Disease resistance protein signature	299	313	-	-
	Apr4g2260	1082	PRINTS	Disease resistance protein signature	392	406	-	-
	Apr4g2260	1082	PRINTS	Disease resistance protein signature	768	784	-	-
	Apr4g2260	1082	Pfam	NB-ARC domain	213	434	IPR002182	GO:0043531
	Apr4g2260	1082	Gene3D	-	191	353	IPR027417	-
	Apr4g2260	1082	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	451	IPR027417	-
	Apr4g2260	1082	Gene3D	Ribonuclease Inhibitor	698	825	IPR032675	-
	Apr4g2260	1082	Gene3D	-	357	441	IPR042197	-
	Apr4g2260	1082	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	21	763	-	-
	Apr4g2260	1082	Pfam	TIR domain	25	203	IPR000157	GO:0007165
	Apr4g2260	1082	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	763	IPR044974	GO:0006952
	Apr4g2260	1082	Gene3D	Ribonuclease Inhibitor	831	1074	IPR032675	-
	Apr4g2260	1082	SMART	till_3	25	165	IPR000157	GO:0007165
	Apr4g2260	1082	Gene3D	Ribonuclease Inhibitor	544	692	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr4g2260	Apr-Chr4	31652623	31658440	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr4g2260	25	825	WRKY Transcription Factor Family	AT4G12020	32.406	5.65e-101	349

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr4g2260	-		-	gmx:100815486	1210.67