Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2259 ATGCAAATACAAGCTGAAGGTGAAGCCTCTTCTTCTGCATCTTCCTATAGTTCAGGGTCAGGGTCAGGGTCATGGACCTACCTATACCACGTTTTCTTGAGTTTTAGGGGAGAAGACACTCGTAAAGGATTCGCCGACCATCTCCGTGTTTCACTGCAAAGAAAAGGAATCACGTTTTTCAGGGATGACAAAGACCTTGAGAGAGGTGAAGTCATTTCACAAGAACTTTTAAAAGCGATTGAAGAGTCTATGTTTGCAATCATCATACTCTCACCAAACTACGCTTCTTCTACTTGGTGTTTAGATGAACTCCAAATGATTGTTGAGTGTAAGAATAAACAAGGCCTACAAGTCTTTCCAATCTTCTATGGTGTGGATCCCTCTAATGTGAGGCATAAAAAATATAGCTTTGAGGAAGCTTTCAAAATACATGAACTGAAATTCGGAAAAGGCAGTTACAAGGTTGAAAATTGGAGAAATGCATTAAGACAAGTTGCTGGTTATTCTGGCTGGGACTCCAACAATCAGCCTGAAGCAATGCTCGTCGATGACGTTGCTCAACACATTCTTAAAAAGTTGATACCAAAACTGCCATCTTGCAATGAAAACCTTGTTGGGATTGATTCAAGGGTGGAGGAAGTGAACAGGCTCATTGGAATATGGTTGAATGATGTTCGCCTCATAGGCATATGGGGCATGGGTGGCATAGGTAAGACAACTATCGCAAGAGCAGTGTATGAAGCAATAAAAGAGAATTTCGAAATTAGTTGCTTTGTTCCCAACGTTAGAGAGGTATATGAGAAAAATGGTTTGGTTCAATTACAAAAGGATCTTCTTTCTCGTCTAAATATAAACAGTTGTGATATTCACGATTTGTATGATGGGAAAAAGACAATAAGAAACTCTTTATGCAATAGAAAGGTTCTTCTTGTTCTTGATGATGTAAGCCATCGGAGCCAATTGGAAAATTTGGCTGCAAAGAAAGATTGGTTTGGTGCAGGAAGCAGAGTAATAATCACAACAAGAGATATGCATCTGTTATTGATACATGGTGTGTACGGAACTTATGAGGTTGAAGGGTTAGTCCAAACTGATTCCCTTCATCTCTTTTCTCTCAAAGCCTTCAAACAAACTCAACCTGACCAATGTTATATGGATTTGTCCAAAGAAGTGGTCAAATATGCAAAGGGTCTTCCATTGGCACTGGAGGTGTTGGGTTCCTATCTTTATAGAAGATCCGTTGATGTTTGGCATAGTGCTTTGGAACAAATAAAAAGTCAGTCACATCCTGAAATTCTAGATACACTGAAAATAAGTTATGAGGGCTTAAATGCAATGGAGAAGAATTTATTTCTAGATATAGCATGTTTCTTCAAAGGAATGAAAAGAAATAAAGTAATAAAGATATTACAAAATAGTGGCCATTATCCCATTATAGGAATTGAAGTTTTGATTGAAAGATCCTTGGTAACTATAGAATGGTGGAGTGATAATTTGGAGATGCATGATTTGATTCAAGAAATGGGCAGGAATATTGTATTCCAAGAATCTCCAAATGATCCTGGAAAGCGCAGTAGATTGTGGTCTCGTGACGAAATTGATACTGTGTTTACAGAAAGTAAGGGAACTGAGGTAATTCAAGGAATTGTTTTAAACTTGCTTCAACCACACGTAGCAAGCTGGAGCACTGAAGCCTTCTCCAACACAAAGCAGCTAAAATATCTCGTTTTAGATGACCTGAAACTTCAATTTGGTTTGAACTTCCTTCCTAGTTCACTAAAAGTTCTTCATTGGAGAGGATGCTCTTTGAAAACTTTGCCACTCATGGATCGGTCATATGAATTATCTGACATTAAATTGTCTCATAGCGAAATTGAACAAGTATGGCATGGAGAAAAGTTTCTGGAAATGCTGAAGCACTTGGATTTGAGTTTTTCCAAGAACCTAAAGCGATTGCCTGATTTTTCTGGGGTTCCAAATATTGAAACATTGGATCTTGGATTTTGCAGTAGCCTAGCCGAAGTCCATCCATCCCTTGTACACCACAAGAAACTTGTTACATTGTATTTGGATTATTGCACAAGTCTTAAAGCTCTTCCAAGTAAACTGGAGATGAGTTCCCTGAAGGAGCTACATCTCGATGGTTGCTCTGAATTCAAAATTCTTCCAGGATTTGGGGAAAGTATGAAACATTTGTTAGTGCTTTCTTTGAAGGGAACAGCTATAAGAAAACTTTCCACAACACTCGGATGTTTAGTTGGCCTTGAGGTTTTGAACTTAAAGAATTGCAAGCTTTTTGTTTCCCTTCCAGACAGCATGCAAAGATTGTGCTCCTTGAAGAAGTTGGTTCTTTCTGGTTGCTCTAAATTTAGAAATCTCCCTGAGTTTGGGGAAGGTATGAAATATCTATCGAAGCTTTATTTGGATGGAACTGGTATAAGAGAACTTCCCACATCACTTGGGTGCCTAGTTGGCCTTGTTCGTTTGGATTTATCGTATTGCAAAAAACTTGTTGGCCTACCAGATGCCATTGGTAGATTGAAGTCCCTTAAATACCTATATATCTATGAAGCCTGGAAGCTTGGTAAATTATCATTTTCTGGGAATGAGAGGCTGGGGTTTAAGAGTCAACCAACTCACATTAGACTTGGGTTTCCACCTTCTCTCTTGAATCTGCCCTCTCTGATCTCTCTACATTTATCTTATTGCAATTTGTCTGAGAAATCAATTCCACATGATATTTCTAACTTAACATCATTGAAGAAGTTGTGGATGAAGGGTAACAAGTTTGTGACTCTGCCAATAAACATTTCTAAACTTTCAAAGCTGGAACTTCTTTCATTGACTCATTGCACAATGCTTCGATGCTTGCCAGAGCTTCCCTCAAGTATAAGGGGATTGTTTGCAAGCGATTGTTATTCACTGGAAACATCCAACTTCAATTTATGCAGTCTCTTTGCATCATGTGGGCAATGTCCTCCTAAGGTAGCAGATTCATTTGACATGGTGATCACAAGGAGTGAAATTCCATCATGGTTTATCCATCAAGAAGATGGTGAATATGTTTCAGTCCCTCGTAATTGCCCGCTGAATGATAGGGTGGGAATTGCTTTGTGTTTCCTATTAATAAGTTATGCAGATCCATATGAGGGATTCAATTATGTAGTCAAATGCTGTTTAGGTAGCCCTTTGGGTAAATGCATCAGGGAAACACGTTTATCTCGGATGGAGTCGGGTTATGCTCACCTTTATATTCTCTTTCTAGCTGATCCTCAATCCTGGGGCCAAATTTGCCTAGGTAGTCGCTTTGGACTGTTTCAAAAAGCAAAAGATTTTACCGATGATGACAAATGTGGTCATCCAGATCTATTGGATTTGAAAGTAGTGAGCTGTGGTTCCCGTTGGTTATATAAAAAAGATATTCAAGTTTTGAACAATACCATTACCACCAAGCAATTGCAACCCAACTCAGAGATATTGGAGCTCACCACATAG 3495 0.3886 MQIQAEGEASSSASSYSSGSGSGSWTYLYHVFLSFRGEDTRKGFADHLRVSLQRKGITFFRDDKDLERGEVISQELLKAIEESMFAIIILSPNYASSTWCLDELQMIVECKNKQGLQVFPIFYGVDPSNVRHKKYSFEEAFKIHELKFGKGSYKVENWRNALRQVAGYSGWDSNNQPEAMLVDDVAQHILKKLIPKLPSCNENLVGIDSRVEEVNRLIGIWLNDVRLIGIWGMGGIGKTTIARAVYEAIKENFEISCFVPNVREVYEKNGLVQLQKDLLSRLNINSCDIHDLYDGKKTIRNSLCNRKVLLVLDDVSHRSQLENLAAKKDWFGAGSRVIITTRDMHLLLIHGVYGTYEVEGLVQTDSLHLFSLKAFKQTQPDQCYMDLSKEVVKYAKGLPLALEVLGSYLYRRSVDVWHSALEQIKSQSHPEILDTLKISYEGLNAMEKNLFLDIACFFKGMKRNKVIKILQNSGHYPIIGIEVLIERSLVTIEWWSDNLEMHDLIQEMGRNIVFQESPNDPGKRSRLWSRDEIDTVFTESKGTEVIQGIVLNLLQPHVASWSTEAFSNTKQLKYLVLDDLKLQFGLNFLPSSLKVLHWRGCSLKTLPLMDRSYELSDIKLSHSEIEQVWHGEKFLEMLKHLDLSFSKNLKRLPDFSGVPNIETLDLGFCSSLAEVHPSLVHHKKLVTLYLDYCTSLKALPSKLEMSSLKELHLDGCSEFKILPGFGESMKHLLVLSLKGTAIRKLSTTLGCLVGLEVLNLKNCKLFVSLPDSMQRLCSLKKLVLSGCSKFRNLPEFGEGMKYLSKLYLDGTGIRELPTSLGCLVGLVRLDLSYCKKLVGLPDAIGRLKSLKYLYIYEAWKLGKLSFSGNERLGFKSQPTHIRLGFPPSLLNLPSLISLHLSYCNLSEKSIPHDISNLTSLKKLWMKGNKFVTLPINISKLSKLELLSLTHCTMLRCLPELPSSIRGLFASDCYSLETSNFNLCSLFASCGQCPPKVADSFDMVITRSEIPSWFIHQEDGEYVSVPRNCPLNDRVGIALCFLLISYADPYEGFNYVVKCCLGSPLGKCIRETRLSRMESGYAHLYILFLADPQSWGQICLGSRFGLFQKAKDFTDDDKCGHPDLLDLKVVSCGSRWLYKKDIQVLNNTITTKQLQPNSEILELTT* 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2259 1164 Pfam NB-ARC domain 216 430 IPR002182 GO:0043531
Apr4g2259 1164 Gene3D Ribonuclease Inhibitor 880 988 IPR032675 -
Apr4g2259 1164 Gene3D Ribonuclease Inhibitor 549 723 IPR032675 -
Apr4g2259 1164 Gene3D Ribonuclease Inhibitor 724 879 IPR032675 -
Apr4g2259 1164 SUPERFAMILY L domain-like 550 864 - -
Apr4g2259 1164 SMART till_3 28 168 IPR000157 GO:0007165
Apr4g2259 1164 Coils Coil 1160 1164 - -
Apr4g2259 1164 Pfam TIR domain 29 206 IPR000157 GO:0007165
Apr4g2259 1164 Gene3D - 361 444 IPR042197 -
Apr4g2259 1164 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 885 967 IPR044974 GO:0006952
Apr4g2259 1164 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 730 859 IPR044974 GO:0006952
Apr4g2259 1164 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 31 639 IPR044974 GO:0006952
Apr4g2259 1164 SUPERFAMILY "Winged helix" DNA-binding domain 431 534 IPR036390 -
Apr4g2259 1164 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 171 IPR035897 -
Apr4g2259 1164 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 885 967 - -
Apr4g2259 1164 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 730 859 - -
Apr4g2259 1164 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 31 639 - -
Apr4g2259 1164 Gene3D - 24 192 IPR035897 -
Apr4g2259 1164 Gene3D - 193 350 IPR027417 -
Apr4g2259 1164 SUPERFAMILY L domain-like 863 971 - -
Apr4g2259 1164 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g2259 1164 ProSiteProfiles TIR domain profile. 27 193 IPR000157 GO:0007165
Apr4g2259 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 454 IPR027417 -
Apr4g2259 1164 PRINTS Disease resistance protein signature 227 242 - -
Apr4g2259 1164 PRINTS Disease resistance protein signature 302 316 - -
Apr4g2259 1164 PRINTS Disease resistance protein signature 395 409 - -
Apr4g2259 1164 PRINTS Disease resistance protein signature 938 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2259 Apr-Chr4 31646220 31650721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2259 29 829 WRKY Transcription Factor Family AT4G12020 30.891 3.80e-99 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2259 - - aprc:113861574 2309.26