Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2254 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCAAGGAACACCAGTGTATTACTATTGCCCACCAACTTTTGAAGAGCGGGAGTCTTTAACATTTAATGATGGCACAACTCCTTCACTGAATGCTGGATTTCTAGTTGGTTTGAACCTGGAAGTATCCAATCCTGATACTTTCCGGCCCCCACCTGTGCCTCTACCTTATGATACCATCCTGGGAGGTTCTGCATCAACAGATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAGCTTTAATTACACATGAAGATAGTGAAGAGTCAGATTGTAAAGCCCAAGTAAATTCTGCACCTATATCTCCAAGAAAGGCAGAACTATCAAAATCAAATGAATTTCAAGTATTAGTGACAGAGGAAGAGGATGTCTGTCCAATTTGTCTGGAAGAATATGATGTTGAGAATCCTAGAAATTTGACAAAATGCGAACACCATTTTCACCTATGTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGACCAGGAGATGATATTTTGA 555 0.4054 MGGCCCSARKPHLQGTPVYYYCPPTFEERESLTFNDGTTPSLNAGFLVGLNLEVSNPDTFRPPPVPLPYDTILGGSASTDSESGRETVSSFEALITHEDSEESDCKAQVNSAPISPRKAELSKSNEFQVLVTEEEDVCPICLEEYDVENPRNLTKCEHHFHLCCILEWMERSDSCPICDQEMIF* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2254 184 Pfam Ring finger domain 137 178 IPR001841 -
Apr4g2254 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 183 IPR013083 -
Apr4g2254 184 SUPERFAMILY RING/U-box 131 182 - -
Apr4g2254 184 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 184 - -
Apr4g2254 184 SMART ring_2 138 178 IPR001841 -
Apr4g2254 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 184 - -
Apr4g2254 184 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2254 Apr-Chr4 31572587 31576222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2254 1 184 C3H Transcription Factor Family AT4G00335 58.602 1.25e-71 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2254 - - gmx:100812687 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2254 4 31572587 31576222 Apr10g1316 10 25484361 25488347 PCT