Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2252 ATGTTGAATGATGGGCAACCCTTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAAGGTGGATATGATGCTGTTTGTAAGAACAGGTTGTGGGATTTGGTGGGGGAAGAATATGGTTTGGGTGTGAAGGTTGGTTCTTCTGTGGAGCTGGTTTACAGTAAGCACTTGAGTGCTCTGGAGACATGCCTGAAGAATGCTGCTGACAGTAAGTTTCCTGAGTGTGGTTTAGTGGATGATAGAGTTAAATTTCGCAAGCGTTTGATGGAGGCGCAAGCTGAATTCTTGGTGGATGATTATGGTGCGGAGGAGGTGGATGATGAACTCGAGAGGAGGGGGTATGATTGTCCGGATGGGAGAAAGTTGTGCGGTACTAACAGAGTGAAGGGCGTGAAACCAGAGTCCAATGTGGCTGAACTCGAGAGGGTATATGACTATCTAGACGGGAGGAAGTTGTGTGGTGCTAATAGAGTGAAGGACATGAATCTGGAGTCTAATGGGGCCAAGAGAGTTCGGACTGTAGGACTTGTTGATTTTGATAAGCTGGACCATGGGATAAATGAACCTATTCTTGGAAACTTGTGCAATGACAATGCTGCAATGGAAATACTTGAAGAGGTTGATAGAGGCAAATCATTCACTCTGGATGCATCCAATGCAGAAAACAACATGCCTGGATTGTCAGATGGGGACAAGAGGTGTGATAATGATGGTGATGAAGTCATGAGACTGGATCCATCTAGTGTTGACATGGAGGGCTTTGGTCGTAAGAGGAAGAGAGAGTCCATATCGGAAATGCTAAGCTGGGTTACTAGCATTGCTAAAAATCCTTGTGATCCTGTGGTTGGTTCAATGCCTGAAAAGTCAAAATGGAAGTCTTACAGTAATCAGGAGATCTGGAAGCAGGCTTTGATGTTTCGAGAAGCTGTCTCGGTGAAGAAGGATTTTGAGACAATCAATGAACAACTTAGTTGGCAGGGTCAGAAAATGCACCCTTCCATGTATGATGATCGCCTTCGGGTAACCTACAATCTTAGACAGAGGTTGAAACGTGACAAGAGGCCATTATTGGGAAAATCTACATCTGATGGAATCTCTTCAGATTCTTCTGAAAGAACACTTGGAGGTTTGGAGAGAACCCCAAGTCCTCGTACGGAAGATGGTGCTGAGAAACAGTTACTTGACTCTAGTACTTCACGCTTAAGTCTTGATAGATATGCCAGAGTGCAAGTCCCTGTGGGGCCAAACCATCAAGCTGAAGTGCCAGAATGGACTGGCATGACTTGTGAGAGTGATTCTAAGTGGTTGGGAACCCAAATATGGCCTCCAGAAACTGTAAATTCCAAGCTTCTTTTTGAAAGGGACCCCATTGGAAAGGGAAGAGAAGATTCATGTGGCTGCCATGTACAAGGTTCTGTTGAGTGTGTCCGATTCCACATTGCTCAGGAAAGGTCAAAAGTTAAGTTGGAATTAGGTGAGGCTTTTTACCAATGGAATTTACATAAGGCGGGTGAAGAAGTTAGGCGTTTATGGACAGTCCAAGAAGAGAAGAAGTTCAAAGATGTGGTTAAATCAAATCCTCCTTCACTTGATAGGTGCTTTTGGGATCATCTGTTCAAAACATTTCCTATGAAGAGCAGAGAAGATTTAGTCAGCTACTACTTCAATGTCTTTCTCTTGCAGCGCAGAGGATACCAGAATAGGCATACTCCTGATAACATTAACAGTGATGATGATGAATCAGAATTTACACCATTGAGGAAAGTTTTTGGACATAAATCACGCAGCTTCACCTTATTATCCCCCAAAAAGCCATTGACAAAAGGGAAAATAGCAAGTCCTCAATGTTAG 1851 0.436 MLNDGQPLDLYKLFMVVKEKGGYDAVCKNRLWDLVGEEYGLGVKVGSSVELVYSKHLSALETCLKNAADSKFPECGLVDDRVKFRKRLMEAQAEFLVDDYGAEEVDDELERRGYDCPDGRKLCGTNRVKGVKPESNVAELERVYDYLDGRKLCGANRVKDMNLESNGAKRVRTVGLVDFDKLDHGINEPILGNLCNDNAAMEILEEVDRGKSFTLDASNAENNMPGLSDGDKRCDNDGDEVMRLDPSSVDMEGFGRKRKRESISEMLSWVTSIAKNPCDPVVGSMPEKSKWKSYSNQEIWKQALMFREAVSVKKDFETINEQLSWQGQKMHPSMYDDRLRVTYNLRQRLKRDKRPLLGKSTSDGISSDSSERTLGGLERTPSPRTEDGAEKQLLDSSTSRLSLDRYARVQVPVGPNHQAEVPEWTGMTCESDSKWLGTQIWPPETVNSKLLFERDPIGKGREDSCGCHVQGSVECVRFHIAQERSKVKLELGEAFYQWNLHKAGEEVRRLWTVQEEKKFKDVVKSNPPSLDRCFWDHLFKTFPMKSREDLVSYYFNVFLLQRRGYQNRHTPDNINSDDDESEFTPLRKVFGHKSRSFTLLSPKKPLTKGKIASPQC* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2252 616 Pfam ARID/BRIGHT DNA binding domain 4 61 IPR001606 GO:0003677
Apr4g2252 616 MobiDBLite consensus disorder prediction 352 397 - -
Apr4g2252 616 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Apr4g2252 616 CDD SANT 511 558 IPR001005 -
Apr4g2252 616 SMART ELM2_2 411 462 IPR000949 -
Apr4g2252 616 SMART bright_3 1 66 IPR001606 GO:0003677
Apr4g2252 616 SUPERFAMILY ARID-like 4 73 IPR036431 GO:0003677
Apr4g2252 616 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 608 - -
Apr4g2252 616 CDD ARID 4 61 - -
Apr4g2252 616 MobiDBLite consensus disorder prediction 360 376 - -
Apr4g2252 616 Gene3D - 1 73 IPR036431 GO:0003677
Apr4g2252 616 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 608 - -
Apr4g2252 616 SMART ARID_2 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2252 Apr-Chr4 31543567 31549082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2252 5 78 ARID Transcription Factor Family AT1G20910 35.065 7.43e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Apr4g2252 ARID 6.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2252 - - gmx:102667655 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2252 4 31543567 31549082 Apr10g1318 10 25500373 25504862 PCT