Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2243 ATGCAAACACAAGCTGAAGGTGAAGCCTCTTCTTCTGCATCTGCATCTTCCTATAGTTCAGGATCAGGGTCATGGACCTACCTATACCATGTGTTCTTGAGTTTTAGGGGAGAAGACACTCGTAAAGGATTTACTGATCATCTTTGTGCTTCGCTTAAAAGAAAAGGAATCAAAACTTTCAGGGATGACAAAGACCTTGAGAGAGGTCATGCCATTTCACAAGAAATTTTGAAAGCAATTGAAGAGTCTATGTTTGCAATCATCATACTCTCACCAAACTATGCTGCTTCTACTTGGTGTTTGGATGAACTCCAAATGATTGTTGAGTGTAAGAACAAACAAGGCCTACAAGTCTTTCCAATCTTCTATGGTGTGGATCCCTCTAATGTGAGGCATCAAAAATATAGCTTTGAGGAAGCTTTCAAAATACATGAACTGAAATTCGGAAAAGGCAGTTACAAGGTTGAAAATTGGAGAAATGCATTAAGACAAGTTGCTGGTTATTCTGGCTGGGACTCCAACAATCAGCCTGAAGCAATGCTCGTCGATGACATTGCTCAACACATTCTTAAAAAGTTGATACCAAAACTGCCATCTTGCAATGAAAACCTTGTTGGGATTGATTCAAGGGTGGAGGAAGTGAACAGGCTCATTGGAATATGGTTGAATGATGTTCGCCTCATAGGCATATGGGGCATGGGTGGCATAGGTAAGACAACTATCGCAAGAGCAGTGTATGAAGCAATAAAAGAGAATTTCGAAATTAGTTGCTTTGTTCCCAACGTTAGAGAGGTATATGAGAAAAATGGTTTGGTTCAATTACAAAAGGATCTTCTTTCTCGTCTAAATATAAACAGTTGTGATATTCACGATTTGTATGATGGGAAAAAGACAATAAGAAACTCTTTATGCAATAGAAAGGTTCTTCTTGTTCTTGATGATGTAAGCCATCGGAGCCAATTGGAAAATTTGGCTGCAAAGAAAGATTGGTTTGGTGCAGGAAGCAGAGTAATAATCACAACAAGAGATATGCATCTGTTATTGATACATGGTGTGTACGGAACTTATGAGGTTGAAGGGTTAGTCCAAACTGATTCCCTTCATCTCTTTTCTCTCAAAGCCTTCAAACAAACTCAACCTGACCAATGTTATATGGATTTGTCCAAAGAAGTGGTCAAATATGCAAAGGGTCTTCCATTGGCACTGGAGGTGTTGGGTTCCTATCTTTATAGAAGATCCGTTGATGTTTGGCATAGTGCTTTGGAACAAATAAAAAGTCAGTCACATCCTGAAATTCTAGATACACTGAAAATAAGTTATGAGGGCTTAAATGCAATGGAGAAGAATTTATTTCTAGATATAGCATGTTTCTTCAAAGGAATGAAAAGAAATAAAGTAATAAAGATATTACAAAATAGTGACCATTATCCCATTATAGGAATTGAAGTTTTGATTGAAAGATCCTTGGTAACTATAGAATGGTGGAGTGATAATTTGGAGATGCATGATTTGATTCAAGAAATGGGCAGGAATATTGTATTCCAAGAATCTCCAAATGATCCTGGAAAGCGCAGTAGATTGTGGTCTCGTGACCAAATTGATACTGTGTTTACAGAAAGTAAGGGAACTGAGGTAATTCAAGGAATTGTTTTAAACTTGCTTCAACCACACGTAGCACGCTGGAGCACTGAAGCCTTCTCCAACACAAAGCAGCTAAAATATCTCATTTTAGATGACCTGAAACTTCAATTTGGTTTGAACTTCCTTCCTAGTTCACTAAAAGTTCTTCATTGGAGAGGATGCTCTTTGAAAACTTTGCCACTCATGGATCGGTCATATGAATTATCTGACATTAAATTGTCTCATAGCGAAATTGAACAACTATGGCATGGAGTAAAGTTTCTGGAAATGCTGAAGCACGTGGATTTGAGTTTTTCCAAGAACCTAAAGCGATTGCCTGATTTTTCTGGGGTTCCAAATATTGAAACATTGGATCTTGGATTTTGCAGTAGCCTAGCCGAAGTCCATCCATCCCTTGTACACCACAAGAAACTTGTTACATTGTATTTGGATTATTGCACAAGTCTTAAAGCTCTTCCAAGTAAACTGGAGATGAGTTCACTGAAGGTGCTACATCTCGATGGTTGCTCTGAATTCAAAATTCTTCCAGGATTTGGGGAAAGTATGAAACATTTGTTAGTGCTTTCTTTGAAGGGAACAGCTATAAGAAAACTTTCCACAATACTCGGATGTTTAGTTGGCCTTGAGGTTTTGAACTTAGAGAATTGCAAGCTTTTTGTTTCCCTTCCAGACAGCATGCAAAGATTGTGCTCCTTGAAGAAGTTGGTTCTTTCTGGTTGCTCTAAATTTAGAAATCTCCCTGAGTTTGGGGAAGGTATGCAACATTTATCAGAGCTATATTTAGACGGAACTCGCATAAGGGAACTTCCCTCATCACTTGGATGCCTTGTTGGCCTTGTTTGTTTGGATTTAACATATTGCGAAAACCTTGTTGGCCTACCAGAGACCATTGATAGATTGAAGTCCCTTGAATACCTATATATTTATGACTGCTGGAAGCTCGGTAGTTTATCATTTTCTGGGAACGAGAAGCTGGTGCGTAAGAGTCAACCAACTCACATTAGACACGGGTTTCCACCTTCTCTCTTGTATCTGTCCTCTCTGATCTATCTGGAATTATCTTATTGCAATTTGTCTGAAAAATCAATTCCACATGATATTTCCAACCTAACATCATTGAAGAAGTTGTGGATGGCTGGTAACAAGTTTGTTACTGTGCCGATAAACATTTCTAAACTTTCAAAGCTGGAATTTCTTTCACTAATTCATTGCAAAAAGCTTCGGTGGTTGCCAGAGCTTCCATCAAGTATAAGGCTTTTGTATGCAAGCAATTGTTATTCACTGGAAACATCCAAATTCGATTTATGCAGTCTCTTTGCATCATGTGGACAATATCCTCGCAAGGTAGCGGATTCATTTGACATGGTGATCACAGGCAGTGAAATTCCATCATGGTTTACCCATCAAGAAGATGGTGAATATGTTTCAGTCCCTCGTAATTGCCCGCTGAATGATAGGATGGGAATTGCTCTGTGTTTCCTATTAATAAGTTATGCTGAACCACATGAGGGATTCGATTATGTAGTCAAATGCAATTTAGGTAACCCATTGGGTAAATGCATTAGGGAAACACGTTTATCTCGGATGAAGTCGGGTTGTGCTCACCTTTATATTCTCTTTCTAGCTGACCCTGAATCCTGGGACCAAATTTGCCAAAGTAGTCGCTTTGGACTGTTTCAAAAAGCAAAATATTTCACTGATGCTGACAAATGTAGTCATCCAGATGTATTGGATTTGAAAGTGGTGAGCTGTGGTTCCCGTTGGTTATACAAACAAGATATTCAAGTTTTGAACAATACCATTACCACCCAGCAATTGCATCCAGACTCAGAGATATTGGAGCTCACCACATAG 3495 0.3877 MQTQAEGEASSSASASSYSSGSGSWTYLYHVFLSFRGEDTRKGFTDHLCASLKRKGIKTFRDDKDLERGHAISQEILKAIEESMFAIIILSPNYAASTWCLDELQMIVECKNKQGLQVFPIFYGVDPSNVRHQKYSFEEAFKIHELKFGKGSYKVENWRNALRQVAGYSGWDSNNQPEAMLVDDIAQHILKKLIPKLPSCNENLVGIDSRVEEVNRLIGIWLNDVRLIGIWGMGGIGKTTIARAVYEAIKENFEISCFVPNVREVYEKNGLVQLQKDLLSRLNINSCDIHDLYDGKKTIRNSLCNRKVLLVLDDVSHRSQLENLAAKKDWFGAGSRVIITTRDMHLLLIHGVYGTYEVEGLVQTDSLHLFSLKAFKQTQPDQCYMDLSKEVVKYAKGLPLALEVLGSYLYRRSVDVWHSALEQIKSQSHPEILDTLKISYEGLNAMEKNLFLDIACFFKGMKRNKVIKILQNSDHYPIIGIEVLIERSLVTIEWWSDNLEMHDLIQEMGRNIVFQESPNDPGKRSRLWSRDQIDTVFTESKGTEVIQGIVLNLLQPHVARWSTEAFSNTKQLKYLILDDLKLQFGLNFLPSSLKVLHWRGCSLKTLPLMDRSYELSDIKLSHSEIEQLWHGVKFLEMLKHVDLSFSKNLKRLPDFSGVPNIETLDLGFCSSLAEVHPSLVHHKKLVTLYLDYCTSLKALPSKLEMSSLKVLHLDGCSEFKILPGFGESMKHLLVLSLKGTAIRKLSTILGCLVGLEVLNLENCKLFVSLPDSMQRLCSLKKLVLSGCSKFRNLPEFGEGMQHLSELYLDGTRIRELPSSLGCLVGLVCLDLTYCENLVGLPETIDRLKSLEYLYIYDCWKLGSLSFSGNEKLVRKSQPTHIRHGFPPSLLYLSSLIYLELSYCNLSEKSIPHDISNLTSLKKLWMAGNKFVTVPINISKLSKLEFLSLIHCKKLRWLPELPSSIRLLYASNCYSLETSKFDLCSLFASCGQYPRKVADSFDMVITGSEIPSWFTHQEDGEYVSVPRNCPLNDRMGIALCFLLISYAEPHEGFDYVVKCNLGNPLGKCIRETRLSRMKSGCAHLYILFLADPESWDQICQSSRFGLFQKAKYFTDADKCSHPDVLDLKVVSCGSRWLYKQDIQVLNNTITTQQLHPDSEILELTT* 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2243 1164 ProSiteProfiles TIR domain profile. 27 193 IPR000157 GO:0007165
Apr4g2243 1164 SUPERFAMILY L domain-like 514 977 - -
Apr4g2243 1164 Pfam NB-ARC domain 216 430 IPR002182 GO:0043531
Apr4g2243 1164 Gene3D Ribonuclease Inhibitor 547 717 IPR032675 -
Apr4g2243 1164 Gene3D - 194 350 IPR027417 -
Apr4g2243 1164 PRINTS Disease resistance protein signature 227 242 - -
Apr4g2243 1164 PRINTS Disease resistance protein signature 302 316 - -
Apr4g2243 1164 PRINTS Disease resistance protein signature 395 409 - -
Apr4g2243 1164 PRINTS Disease resistance protein signature 703 719 - -
Apr4g2243 1164 Pfam C-JID domain 1005 1141 IPR045344 -
Apr4g2243 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 454 IPR027417 -
Apr4g2243 1164 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 744 1069 IPR044974 GO:0006952
Apr4g2243 1164 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 766 IPR044974 GO:0006952
Apr4g2243 1164 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 30 766 - -
Apr4g2243 1164 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 744 1069 - -
Apr4g2243 1164 Gene3D - 24 193 IPR035897 -
Apr4g2243 1164 Gene3D - 361 444 IPR042197 -
Apr4g2243 1164 Pfam TIR domain 29 206 IPR000157 GO:0007165
Apr4g2243 1164 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 171 IPR035897 -
Apr4g2243 1164 Gene3D Ribonuclease Inhibitor 881 995 IPR032675 -
Apr4g2243 1164 Gene3D Ribonuclease Inhibitor 720 880 IPR032675 -
Apr4g2243 1164 MobiDBLite consensus disorder prediction 1 21 - -
Apr4g2243 1164 SMART LRR_typ_2 892 916 IPR003591 -
Apr4g2243 1164 SMART LRR_typ_2 800 823 IPR003591 -
Apr4g2243 1164 SMART LRR_typ_2 917 940 IPR003591 -
Apr4g2243 1164 SMART LRR_typ_2 752 776 IPR003591 -
Apr4g2243 1164 SMART till_3 28 168 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2243 Apr-Chr4 31445223 31449556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2243 29 826 WRKY Transcription Factor Family AT4G12020 31.380 7.04e-98 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2243 - - aprc:113861574 2144.78