Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2238 ATGGCTGTGGTGAGTCCTGCGCCTGCAACACAAAGGATGGCTTCTGTGAGGTCACTTACTGATGATGGTGGAGAAATATTGGAGGAGCCTAATCCTATTGTGGTTGATGAGTCAATTTATGTTACTGCGGTAAAAGATGTGAAGGAAGGCAAATCAAATCTGATATGGGCAATCCAGAACTCTGGTGGAAGGAGGATTTGCATCATTTATGTTCTTGTGCCTGCAACAATGATCCCCATATTAGGAGCTAAATTCCATGTAAGTGCATTAAAAGAGCAGCAGGTTCGAGGATACCGGGAATTTGAAAGGAAAGAAATGCACGAGACTCTGGATGAATATCTTCGTATCTGTCACCGGATGGGGGTGCGAGCAGAAAAACTGCATATTGAAATGGATAACATCGAAAAAGGAATTTTAGAACTTATCTCCCAGCATAACATCCGAAGGCTTGTTATGGGAGCAGCTTCTGATAAGTACTATAAAAGGAACATGATGGACCTCAGATCTAAGAAAGCCATCTATGTGTCTGAACATGCTCCAGCTTCTTGTCATATTCAGTTTATCTGCAAAGGGCGCCTTATAAATACAAGGAATCGCAGTTTGAATGAAGGTAATGTAGAGGTTGCATCTCCTCTGGTGCAGCAAGTGCCGAGATCTCAATCCATTACACTGGGGCAAAATCATGGGACAAATCTATCTAGTCCTGCTCAAGATTTATTTCGCAGAGTGAGGTCTGCCAATGATGGACATAGAGCAATCATTTCGGCTGCTTCTTCTCCAGAAGATTCTGAAGGGTTTTCAACTCCACGTGACAGGATGGGTACAGAAGTAAGTTCTGATGAATCAGATCGGCTTTCAAGGATGAGTCCTTCAGGCTTATCAACATGCTCTGACAGCGCAGTTGAGTCGGCATTGACCACAAGTTTGATCACTGAAAGGAGTGAGAGTGTAATAGACTTGACTTTGAGTCACCTGATTAAAGAGGATCTTCGACATTCATCTCCTCCTAGTGTACTGCAGGATGGTGTAATGAATGATACTATCTACGACCAGCTTGAACAGGCTATGGCTGAGGCTGAGAATGCTACACGAAATGCATATCAAGAAACAATTAGGCGTGGAAAAGCTGAAAAAGATGCCTTTGATGCTATACGCAAGGCCAAAGCTTCTGAAAGCTTATATACAGAGGAGTTGAACCTGAGGAAAATGGCAGAGGAAGAACTTAAAAAAGAAAAAGAAGAAGTTGAGAATATGAAGAGACAGAGAGATAAGGTTAAGGAAGAACTCCAACTTGCCCTTGATCAGAAGGCATCACTAGAGAGTCAAATTGCATCATCTGAACTTATGATAAAGGAGTTGGAGCAGAAGATTATATCTGCTGTGGATCTTTTACAGAGCTACAAGAATGAACGAGAGGAATTGCAGGTGCAGCGTGATAATGCATTGAGAGAGGCTGAAGAGTTGAGAAAATTACAAGGAGAGGCCTCAAGCACACATGTGCCTCAACTGTTCTCAGAATTCTCTTTTACGGAGATTAAAGAAGCAACAAATAACTTCAATTCATCCTTAAAGATCGGAGAGGGAGGATATGGAAGTATATTTAAAGGTGTCCTACGTCACACTGAGGTGGCTATAAAAATGTTGCACTCCAACAGTATGCAAGGACCCTCAGAGTTTCAGCAAGAGGTTGATGTATTGAGCAAGCTAAGGCATCCCAATCTTATCACACTTATAGGAGCCTGCCCTGAGTCCTGGACTCTTGTCTATGAGTATTTACCAAATGGAAGCCTTGAAGACCGTCTTTCCTGCAAAGATAACACCCCTCCATTATCATGGCAAATTCGAATTCGCATTTCTGCTGAACTATGTTCTGCTCTCATCTTTCTCCATTCCAGTAAACCTCACAGCATAGTGCACGGTGACTTAAAACCCTCCAACATTCTCCTTGACGCAAATCTTATTAGCAAACTTAGTGACTTTGGAATCTGCCGTATATTATCTCATTGCGAGAGTTCTATTAATAATACTACACAGTTTTGGAGAACTGATCCAAAGGGAACTTTTGCCTACATGGATCCTGAATTCCTTGCCTCAGGGGAACTTACCCCAAAGTCAGATGTTTATTCATTTGGAATCATATTATTAAGATTGTTGACTGGGAGACCAGCCTTGGGAATCACAAAGGAAGTGAAATATGCATTAGATAGTGGAAAGTTGAAATCCCTATTGGACCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAGTTGGCTCGCTTGGCTTTGAGGTGTTGTGAGATGAACAGAAAGAGCCGGCCGGATCTATATTCAGATGTCTGGAGGATTCTTGATGCGATGAGGGCTTCTTCTGGAGGCACAAACTCCTTTGGACTATGTTCTGAAGGCCTTCTCCAACCTCCTTCATATTTCATTTGTCCAATCTTCCAGGAAGTCATGCGAGAACCGCATGTAGCTGCAGATGGTTTTACTTATGAAGCTGAGGCCATACGAGGATGGCTTGATAGCGGTCATGACACTTCGCCAATGACAAATGGTAAGCTTGTACATCACAATCTTGTCCCTAACCGCGCTCTTCGCTCTGCAATCCAGGACTGGCTTCAAAGTCACTGA 2634 0.4301 MAVVSPAPATQRMASVRSLTDDGGEILEEPNPIVVDESIYVTAVKDVKEGKSNLIWAIQNSGGRRICIIYVLVPATMIPILGAKFHVSALKEQQVRGYREFERKEMHETLDEYLRICHRMGVRAEKLHIEMDNIEKGILELISQHNIRRLVMGAASDKYYKRNMMDLRSKKAIYVSEHAPASCHIQFICKGRLINTRNRSLNEGNVEVASPLVQQVPRSQSITLGQNHGTNLSSPAQDLFRRVRSANDGHRAIISAASSPEDSEGFSTPRDRMGTEVSSDESDRLSRMSPSGLSTCSDSAVESALTTSLITERSESVIDLTLSHLIKEDLRHSSPPSVLQDGVMNDTIYDQLEQAMAEAENATRNAYQETIRRGKAEKDAFDAIRKAKASESLYTEELNLRKMAEEELKKEKEEVENMKRQRDKVKEELQLALDQKASLESQIASSELMIKELEQKIISAVDLLQSYKNEREELQVQRDNALREAEELRKLQGEASSTHVPQLFSEFSFTEIKEATNNFNSSLKIGEGGYGSIFKGVLRHTEVAIKMLHSNSMQGPSEFQQEVDVLSKLRHPNLITLIGACPESWTLVYEYLPNGSLEDRLSCKDNTPPLSWQIRIRISAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSHCESSINNTTQFWRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYALDSGKLKSLLDPLAGDWPFVQAEQLARLALRCCEMNRKSRPDLYSDVWRILDAMRASSGGTNSFGLCSEGLLQPPSYFICPIFQEVMREPHVAADGFTYEAEAIRGWLDSGHDTSPMTNGKLVHHNLVPNRALRSAIQDWLQSH* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2238 877 SMART Ubox_2 810 873 IPR003613 GO:0004842|GO:0016567
Apr4g2238 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Apr4g2238 877 ProSiteProfiles U-box domain profile. 806 877 IPR003613 GO:0004842|GO:0016567
Apr4g2238 877 CDD STK_N 38 191 - -
Apr4g2238 877 MobiDBLite consensus disorder prediction 253 298 - -
Apr4g2238 877 MobiDBLite consensus disorder prediction 265 283 - -
Apr4g2238 877 PANTHER OS02G0152300 PROTEIN 30 876 - -
Apr4g2238 877 Coils Coil 394 494 - -
Apr4g2238 877 Pfam Protein kinase domain 522 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2238 877 PANTHER U-BOX KINASE FAMILY PROTEIN 30 876 - -
Apr4g2238 877 SUPERFAMILY RING/U-box 801 876 - -
Apr4g2238 877 Gene3D Phosphorylase Kinase; domain 1 504 591 - -
Apr4g2238 877 CDD RING-Ubox_WDSUB1_like 811 852 - -
Apr4g2238 877 Gene3D Transferase(Phosphotransferase) domain 1 592 796 - -
Apr4g2238 877 Pfam U-box domain 808 877 IPR003613 GO:0004842|GO:0016567
Apr4g2238 877 Coils Coil 345 369 - -
Apr4g2238 877 SUPERFAMILY Protein kinase-like (PK-like) 498 777 IPR011009 -
Apr4g2238 877 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 63 158 - -
Apr4g2238 877 ProSiteProfiles Protein kinase domain profile. 519 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2238 877 Gene3D HUPs 41 185 IPR014729 -
Apr4g2238 877 MobiDBLite consensus disorder prediction 284 298 - -
Apr4g2238 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 806 877 IPR013083 -
Apr4g2238 877 SMART serkin_6 519 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2238 877 ProSitePatterns Protein kinases ATP-binding region signature. 525 546 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2238 Apr-Chr4 31392845 31399321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2238 1 877 U-box Gene Family AT2G45910 54.740 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Apr4g2238 Pkinase 4.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2238 - - gmx:100807515 1444.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2238 4 31392845 31399321 Apr4g2238 4 31392845 31399321 ECH
Apr10g1326 10 25598306 25604381 Apr4g2238 4 31392845 31399321 ECH
Apr4g2238 4 31392845 31399321 Apr10g1326 10 25598306 25604381 PCT