Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2230 ATGGCAACTGATATGCAGAGGCTTGTTGGAACGAGTGAGGATGATGAAGAAATAGGGATGGATGTGAAAGACGAGGATGATGAGGATGATGATTATGAGGAAAATGGAAGTGAGCATGGAAATGCTCCAGGGATGGTTGAGATTGATGGTGGAAATGGAATAGGAACTGCCACTGGTGACAACAGGTTTCAACAGCACCAGCAGTTTCAAGAGCAAGTAGGCACCCCTAGTGGAGGTACCCGAAGATCTAGACCGCTAGAAGAGAAAGAAAGAACAAAACTAAGAGAGAGGCGCCGGAGGGCTATCACTGCAAAGATCTTGGCAGGGCTTCGTAGGCATGGCAACTATAATCTTAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCAAGGGAAGCTGGATGGGTGGTTCTTCCAGATGGAACTACTTTTCCCTCCAGATCTCAGGGTCAAAGGCCAGCTGGTGGTAATTCTACTGTTGTTACATCATCATCTTCCCATGTGCCTTCGCAACAAACTCCTTCTGCTTCCCTCAGGGGAGTTGCTTCTGGATCCGGTTATAGGAGCCCTCTAGAGCATAATGCATGTCAAATAAAAGGTGTTTTCGCGCCAGTTCCATCTCCTTATGATCCATCTTCAAGTTCCCGGTCTCAAACATCTATGGTGGGGGATGGAGAAGCACAAAGAGACAATTGTCCCCTGATTGGTGGTGGTTCAACTGATAATGTTGATGAGAAGCAGATGGTTGATATGTCCCCCAGATTACCAGAGCGTGATTTGGCTGGTACTCCATATGTTCCAGTTTACGTGATGCTACCGTTAGGGGTGATCAATATCAAATGTGAGCTTGTTGATCCGGATGGTCTACTAAAGCAGCTGAGGGTGTTGAAATCAGCAAATGTTGATGGTGTAATGGTAGACTGTTGGTGGGGAATAGTGGAGGCACATGCCCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGTGAACTTAAGCTTAAGCTGCAGGTTGGGATGTCTTTTCATGAATGTGGAGGCAATTTTGGTGATGATGTTTGCATTCCATTACCTCATTGGGTAGCTGAAATTGGTAGAAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGACACAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGGGTTTTAAGAGGTCGGACTGCTGTGGAGGTTTATTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAATATTTTGAGGATGGCTTCATCTCCTTGATTGAAGTTGGACTGGGTCCATGTGGAGAGCTAAGATATCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGCTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGTAAGGGGGCATTCTATTTGGGCTAGAGGGCCCGATAATGCTGGTACCTATAATTCTCAGCCTCATGAAACAGGTTTCTTTTGTGATGGAGGTGATTATGATGGCTTCTATGGCAGATTTTTCCTTAGCTGGTACTCTCAGATTTTAGTTGATCATGGAAATCGGGTTCTTTCACTGGCAAAATTAGCTTTTGAGGGATCCTGTATTTCTGCAAAGCTATCGGGAATTTACTGGTGGTACAAGACTGCTAGTCATGCTGCTGAATTAACTGCTGGATATTATAATCCGTGTAATCGTGATGGTTATGCTGCAATTATGGCAATGTTGAAGAGAAATGGAGTTAGCTTAAACATTCCTTGTGTTGACTTGCACACATTGAATCAACATGAGGGATTTCCAGAGACATTTGCAGATCCTGAGGGATTAGTATGGCAGGTGTTGAATGCTGGATGGGATGTTGGCCTACCAGTTGCCACTCAGAATGCACTCCCTTGCCTAAACAGAGTTAGCTATAACAAGGTTTTGGATAATGCCAAGCCCATAAATGATCCAGATGGAAGGCATTTTTCATCCTTTACTTACCTGAGGCTTAGTCCACTTCTTATGGAACGTCAAAACTTCGTAGAGTTTGAACGATTTGTCAAGAGAATGCATGGGGAAGCTGTTCTTGATCTTCAGGTATAA 2118 0.4386 MATDMQRLVGTSEDDEEIGMDVKDEDDEDDDYEENGSEHGNAPGMVEIDGGNGIGTATGDNRFQQHQQFQEQVGTPSGGTRRSRPLEEKERTKLRERRRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGQRPAGGNSTVVTSSSSHVPSQQTPSASLRGVASGSGYRSPLEHNACQIKGVFAPVPSPYDPSSSSRSQTSMVGDGEAQRDNCPLIGGGSTDNVDEKQMVDMSPRLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSANVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVGMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGFISLIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEVRGHSIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQILVDHGNRVLSLAKLAFEGSCISAKLSGIYWWYKTASHAAELTAGYYNPCNRDGYAAIMAMLKRNGVSLNIPCVDLHTLNQHEGFPETFADPEGLVWQVLNAGWDVGLPVATQNALPCLNRVSYNKVLDNAKPINDPDGRHFSSFTYLRLSPLLMERQNFVEFERFVKRMHGEAVLDLQV* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2230 705 PANTHER BETA-AMYLASE 76 705 - -
Apr4g2230 705 PRINTS Plant beta-amylase signature 428 437 IPR001371 GO:0000272|GO:0016161
Apr4g2230 705 PRINTS Plant beta-amylase signature 671 685 IPR001371 GO:0000272|GO:0016161
Apr4g2230 705 PRINTS Plant beta-amylase signature 686 700 IPR001371 GO:0000272|GO:0016161
Apr4g2230 705 Gene3D Glycosidases 259 704 - -
Apr4g2230 705 SUPERFAMILY (Trans)glycosidases 264 701 IPR017853 -
Apr4g2230 705 MobiDBLite consensus disorder prediction 57 79 - -
Apr4g2230 705 Pfam Glycosyl hydrolase family 14 271 691 IPR001554 GO:0000272|GO:0016161
Apr4g2230 705 PANTHER - 76 705 IPR001554 GO:0000272|GO:0016161
Apr4g2230 705 MobiDBLite consensus disorder prediction 17 35 - -
Apr4g2230 705 Pfam BES1/BZR1 plant transcription factor, N-terminal 79 221 IPR008540 -
Apr4g2230 705 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 302 316 IPR001554 GO:0000272|GO:0016161
Apr4g2230 705 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 323 341 IPR001554 GO:0000272|GO:0016161
Apr4g2230 705 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 345 366 IPR001554 GO:0000272|GO:0016161
Apr4g2230 705 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 438 460 IPR001554 GO:0000272|GO:0016161
Apr4g2230 705 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 511 530 IPR001554 GO:0000272|GO:0016161
Apr4g2230 705 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 545 561 IPR001554 GO:0000272|GO:0016161
Apr4g2230 705 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 562 573 IPR001554 GO:0000272|GO:0016161
Apr4g2230 705 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 580 603 IPR001554 GO:0000272|GO:0016161
Apr4g2230 705 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 620 642 IPR001554 GO:0000272|GO:0016161
Apr4g2230 705 MobiDBLite consensus disorder prediction 209 246 - -
Apr4g2230 705 MobiDBLite consensus disorder prediction 146 184 - -
Apr4g2230 705 MobiDBLite consensus disorder prediction 1 95 - -
Apr4g2230 705 MobiDBLite consensus disorder prediction 146 187 - -
Apr4g2230 705 MobiDBLite consensus disorder prediction 210 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2230 Apr-Chr4 31299254 31307302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2230 1 702 Glycoside Hydrolase AT2G45880 65.113 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Apr4g2230 Glyco_hydro_14 1e-103 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2230 K01177 - gmx:100805560 1253.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2230 4 31299254 31307302 Apr4g2230 4 31299254 31307302 ECH