Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2223 ATGGATCGTGGGGACCAAATGGCGTTATCTGGTTCTTACTATATGCAGCAGAGAGGAATAGCTGGTTCTGGAGCACAACCAGAGTTACATGTTTCACCCAATATTCGTCCGCTGTCTAATCCCAATCTACCGTTTCAATCTGGCATTGGTGGTGGTAACATTGGATCCTCCTTACCTGTAGAATCTTCAGCAATTTCGTCTCATGGTGTCAATATGGGTGCTCCTACTGGGGTACCTCCTGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGGTCTGATGGAACTGTGTCGCTGGGATTGAGTCCAACTCCAACATCGTCAAGTCATTCTGGAGGCTTGTTACAAAGCAGCCCGAAACGAGGCAGAGGCCGCCCGCCTGGGTCCGGGAAGAAACAGCAATTGGCTTCTCTTGGTGAATTGATGTCTGGTTCGGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCAAGTGGAGAAGACATTGCAACAAAAATCATGGCGTTTTCTCAGCAGGGGCCTAGAGCTATATGCATTTTGTCAGCCAACGGTACTGTCTCAACTGTCACTCTTCGTCAGCCGTCAACTTCAGGTGGCACTGTCACATACGAGGGGCGCTTTGAGATATTGTGCCTGTCAGGTTCTTACTTGCTCACTGATGTCAGCGGTTCACGCAATCGAACTGGTGGACTAAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGGGGAGTTGGTGGAGTGCTTATTGCTTCAAGTGCTGTTCAGGTGGTAGTTGGGAGCTTTCTATGGGGTGAATCAAAGACAAAGAACAAGAAAAAGGAAGGCTCAGAAGGTGAAGTTGCTGTGGAGTCAGATCATCAGGGAGTTCATAATCCAGTTGCACTGAATAGCATTTCACCAAATCAAAACCTGACTCCAACCTCGTCCTTAAGTCCTTGGTCAACATCGCGTCCCATGGATATGCGCAATTCGCATGTTGACATTGATTTAATGCGTGGTTGA 1023 0.4829 MDRGDQMALSGSYYMQQRGIAGSGAQPELHVSPNIRPLSNPNLPFQSGIGGGNIGSSLPVESSAISSHGVNMGAPTGVPPGEPVKRKRGRPRKYGSDGTVSLGLSPTPTSSSHSGGLLQSSPKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRAICILSANGTVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLTDVSGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSAVQVVVGSFLWGESKTKNKKKEGSEGEVAVESDHQGVHNPVALNSISPNQNLTPTSSLSPWSTSRPMDMRNSHVDIDLMRG* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2223 340 MobiDBLite consensus disorder prediction 19 138 - -
Apr4g2223 340 Gene3D - 155 291 - -
Apr4g2223 340 PRINTS AT-hook-like domain signature 85 95 IPR017956 GO:0003677
Apr4g2223 340 PRINTS AT-hook-like domain signature 121 132 IPR017956 GO:0003677
Apr4g2223 340 MobiDBLite consensus disorder prediction 297 328 - -
Apr4g2223 340 MobiDBLite consensus disorder prediction 100 119 - -
Apr4g2223 340 CDD DUF296 154 268 IPR005175 -
Apr4g2223 340 MobiDBLite consensus disorder prediction 33 70 - -
Apr4g2223 340 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Apr4g2223 340 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Apr4g2223 340 ProSiteProfiles PPC domain profile profile. 149 290 IPR005175 -
Apr4g2223 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 316 - -
Apr4g2223 340 MobiDBLite consensus disorder prediction 275 340 - -
Apr4g2223 340 MobiDBLite consensus disorder prediction 275 291 - -
Apr4g2223 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 268 IPR005175 -
Apr4g2223 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 316 IPR039605 GO:0003680
Apr4g2223 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2223 Apr-Chr4 31232358 31238751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2223 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.549 1.05e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2223 - - gmx:100814615 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2223 4 31232358 31238751 Apr4g2223 4 31232358 31238751 ECH
Apr4g2223 4 31232358 31238751 Apr10g1345 10 25770326 25777808 PCT