Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2218 ATGAACAATAGAGCGAGATACCCACCTGGGATCGGGCTAGGAAGAGGTGGTGGAGGTTTGAACAACACCAACCCTGGGTTTCAACCAAGGCCACATCAACAACAGTATGTGCAGAGACACATGGTGCCACATCAGCACCAACATCAGCATCAGCATCAAAATCAGTATCAGCAGCAGTACCAGCAGCATCACCAACATCAGCAGCAGCAGCAACAACAACAGTGGTTGAGAAGGACCCAGTTGGGTGGTACTGACACCAACGCTGTTGAGGAGGTTGAGAAGACTGTACAGTCGGAAGCTGTTGATCCAAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCGCCACCTGATACACGTTATAAGACAGAGGACGTGACAGCTACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATTCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTGGCTAGAGCTAAAAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCGGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAGGTTGTTATATTGGTCCCAACAAGAGAACTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGCGGTACCAGCTTGAAAGATGACATTATGCGTTTATATCAACCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCAGTGGAGCAGCTGATTCAATTTCTCCCTTCAAATCGTCAAATCCTGATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAAGGATAGATATCTTCGTAAGCCATACGTCATTAACCTTATGGATGAGCTTACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGGCAGAAAGTCCATTGCCTAAATACCCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCTGTGAACCGGGTTGAACTTCTGGCCAAGAAAATCACAGAACTTGGTTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCTTGCAGAAATCTTGTTTGTACTGATCTTTTCACTAGAGGAATAGACATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCAAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTAGGTTTAGCTGTTAACTTGATCACCTATGAGGATCGTTTCAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCACCACACATTGATCAGGCAATATATTGCCGGTGA 1521 0.4129 MNNRARYPPGIGLGRGGGGLNNTNPGFQPRPHQQQYVQRHMVPHQHQHQHQHQNQYQQQYQQHHQHQQQQQQQQWLRRTQLGGTDTNAVEEVEKTVQSEAVDPSSQDWKARLKIPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIQFLPSNRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2218 506 Gene3D - 90 336 IPR027417 -
Apr4g2218 506 Gene3D - 337 506 IPR027417 -
Apr4g2218 506 CDD DEADc_DDX6 134 334 - -
Apr4g2218 506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 333 IPR014001 -
Apr4g2218 506 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 5 506 - -
Apr4g2218 506 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 503 IPR001650 -
Apr4g2218 506 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 279 287 IPR000629 -
Apr4g2218 506 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 5 506 - -
Apr4g2218 506 SMART ultradead3 151 347 IPR014001 -
Apr4g2218 506 CDD SF2_C_DEAD 344 473 - -
Apr4g2218 506 MobiDBLite consensus disorder prediction 21 76 - -
Apr4g2218 506 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 132 160 IPR014014 GO:0003724
Apr4g2218 506 Pfam Helicase conserved C-terminal domain 358 464 IPR001650 -
Apr4g2218 506 Pfam DEAD/DEAH box helicase 157 321 IPR011545 GO:0003676|GO:0005524
Apr4g2218 506 MobiDBLite consensus disorder prediction 1 76 - -
Apr4g2218 506 SMART helicmild6 383 464 IPR001650 -
Apr4g2218 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 486 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2218 Apr-Chr4 31195073 31202838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2218 132 503 Eukaryotic Initiation Factors Gene Family AT3G19760 37.968 4.13e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2218 K12614 - fve:101307921 876.7