Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2217 ATGGGAAGGACACCTTGTTGTGACAAGAAGGGTTTGAAGAAAGGACCATGGACAGCTGAAGAAGATGAAATTCTTGCTAGTTATATCAAGAAGAATGGTGGCCATGGAAGCTGGCGTTCTCTTCCCAGGATGGCAGGTCTTCTTCGTTGTGGTAAGAGTTGCCGGCTTAGATGGACGAACTATCTCAGACCTGACATTAAACGTGGTCCCTTTACTCCCGAGGAAGAGAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATAGCCTCTCAGTTACCAGGAAGAACAGACAATGAGATAAAGAACTTATGGAACACCCATTTGAAGAAGCGTCTTAAAAGCATGGGGCTTGACCCCAAAACTCATGAACCATTGGCCTCATCATCATCATACTCCTTTCACAAGGCACATGCATCAATTTCCACACGTCACATGGCTCAATGGGAGAGTGCTAGGCTTGAAGCTGAGGCCAGACTCTCCAATGAGTCATCGAAGTTCAACAACACCAATCATAATTCCTATGGAGACACCAAAACCACTGATTCTGACTACTTTCTCCGCATTTGGAACTCTGAAGTTGGAGAAGCATTTCGCAATGTTCATCACAAAATAGACAACAAAATCACTAGTTGTTGCAATAGTCCTGCTTCTGCAGGATCATCTTCCAACAAGTGTAGTGAGTCTATTACAACAAATGCTGAATTGGGTTCTAATATTCGAGGAATATCCTCTAACACGGGAACCGTTGTGAAACAAGAGTTGGAGTGGGGGATTCATGGGTCTGATTCATCAAGTTCTAATGACTTGGAAGATTCATCAGACACTGCCTTGCAGCTATTGTTAGATTTTCCTATAAACAATGACATGAGCTTCTTAGAAGAAAACTCCTTTGTTTGTCCACTTTAG 921 0.4321 MGRTPCCDKKGLKKGPWTAEEDEILASYIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPKTHEPLASSSSYSFHKAHASISTRHMAQWESARLEAEARLSNESSKFNNTNHNSYGDTKTTDSDYFLRIWNSEVGEAFRNVHHKIDNKITSCCNSPASAGSSSNKCSESITTNAELGSNIRGISSNTGTVVKQELEWGIHGSDSSSSNDLEDSSDTALQLLLDFPINNDMSFLEENSFVCPL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2217 306 PANTHER PROTEIN ODORANT1-LIKE 1 300 - -
Apr4g2217 306 Gene3D - 11 68 - -
Apr4g2217 306 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr4g2217 306 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Apr4g2217 306 CDD SANT 16 62 IPR001005 -
Apr4g2217 306 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Apr4g2217 306 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Apr4g2217 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Apr4g2217 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Apr4g2217 306 SMART sant 13 64 IPR001005 -
Apr4g2217 306 SMART sant 67 115 IPR001005 -
Apr4g2217 306 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Apr4g2217 306 CDD SANT 70 113 IPR001005 -
Apr4g2217 306 Gene3D - 70 142 - -
Apr4g2217 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2217 Apr-Chr4 31189232 31191817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2217 1 300 MYB Transcription Factor Family AT3G61250 66.118 5.94e-131 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g2217 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2217 K09422 - gmx:100800408 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2217 4 31189232 31191817 Apr4g2217 4 31189232 31191817 ECH
Apr4g2217 4 31189232 31191817 Apr10g1351 10 25835320 25837682 PCT