Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2215 ATGTCATTCACTGGAACACTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTTGTGGACCTGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAAATGCAGCCATTGCAAGGGATATCTTACGATGAGCACCTACTCTTCAATGGATGGTGTTCTCTACTGCAAGCCACATTTTGAACAACTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAGACTGCAAAGTCTTCTGACAAACAAAATGAGCAGACGAATAAGGCCCCCAGCAGACTGTCATCCATGTTCAGTGGAACTCTTGACAAATGCTCAGTTTGCTCAAAAACAGTCTATCCACTAGAAAAGATGACACTGGAAGGGGAATGCTACCACAAGAATTGCTTTAGGTGTGCTCATGCTGGTTGCCACCTCACACACTCCTCCTATGCTGCCCTTGATGGTGTCCTCTATTGCAGGCACCATTTTCAACAGCTTTTCATGGAGAAAGGGAACTACCACCATGTTCTCCAAGCTGCTGCAAACAAGAAGAATGCTACACCCCCTCCTGAACCAGCTGAAGAAGAAGAGCCATCAAAGCCAGAACCTGAGGCTGAGGCTGAGGCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGGAACATGAAGAAGAAAAATCTGAAACATGA 684 0.4532 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSDKQNEQTNKAPSRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQAAANKKNATPPPEPAEEEEPSKPEPEAEAEAEPEPEPEPEPEPEEHEEEKSET* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2215 227 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 202 - -
Apr4g2215 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Apr4g2215 227 MobiDBLite consensus disorder prediction 77 96 - -
Apr4g2215 227 Pfam LIM domain 107 162 IPR001781 -
Apr4g2215 227 Pfam LIM domain 10 65 IPR001781 -
Apr4g2215 227 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Apr4g2215 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Apr4g2215 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Apr4g2215 227 SMART lim_4 9 61 IPR001781 -
Apr4g2215 227 SMART lim_4 106 158 IPR001781 -
Apr4g2215 227 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Apr4g2215 227 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Apr4g2215 227 MobiDBLite consensus disorder prediction 177 227 - -
Apr4g2215 227 Gene3D Cysteine Rich Protein 103 171 - -
Apr4g2215 227 PANTHER OS06G0237300 PROTEIN 1 202 IPR045268 GO:0051015
Apr4g2215 227 MobiDBLite consensus disorder prediction 193 227 - -
Apr4g2215 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 99 132 - -
Apr4g2215 227 Gene3D Cysteine Rich Protein 5 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2215 Apr-Chr4 31176570 31178357 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Apr4g2215 LIM 1.3e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2215 - K09377 gmx:100779513 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2215 4 31176570 31178357 Apr4g2215 4 31176570 31178357 ECH
Apr4g2215 4 31176570 31178357 Apr10g1357 10 25882243 25884268 PCT