Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2190 ATGGGAGTTGGTAGTAATTTCTGGGACCTTCTGAAACCCTATGCGCGCAACGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCTGTTGACCTTTCCTTCTGGATTGTTGTGCATGAGACTGCCATCAAGACCCGTGTCAGGAAACCTCATCTTAGGCTTACCTTCTTTCGCACCATCAATCTCTTCTCTAAGTTTGGAGCATTTCCAGTGTTTGTTGTTGATGGGACTCCATCGCCATTGAAATCACAGGCCAGGATCTTGAGATATTTCCGGTCTTCTGGCATTGAATTGACTAGCTTGCCAGTGCCAGAAGAAGGTGTTTCAGCTAAGAGGAACAGTTTGTTTTCAAGTTGTGTTCGAGAATGTGTGGAACTTGTTGAGCTACTTGGAATGCCTGTACTAAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTTGATGCTTGCATCACATCTGACAGTGATGCATTCCTCTTCGGGGCCAAAAGCATTATAAAATGTTTCTGTCCCAATTCCAAAGAACCATTTGAATGCTACAATATGTCAGATATTGAAGCTGGGCTTGGGTTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCGAGGGATTGGGCTTGATACTGCTCTCAATTTTGTTAAAGCTTTTAATGAAGATGATATATTGAATAGATTGCACGAGATAGGGAAAGGGAATGCTTCACAAATTCCCACTAGCATTAAATCCGAGGACTATTTGGACATGGATGGGAACTCCCCAAGTAAAAAACAACCTCACTGCTCATTCTGTGGGCATCCAGGCACCAAAAGAGATCATATGAAGTTTCCCTGTGAATATTGTGTTACAAAGGATGATGAAGGTTGCCTGAGAAAACCAGAGGGTTTTAAATGTGATTGCTTCTCCTGTGTTTTGAATAGAAGCCACAAGGAGCAGAAAAGACAGGAAAATTGGCATGCAAAAATTTGTCAAAAGATTGCAGAGGAACCAAACTTTCCCAGTGATGAAATCATTGATGTGTATTTATGCAATGACAATGGTTACTTTTCTGCAAATGATGGCCTTCACATCGAATGGAAAAAACCCAATATTGAGTTGTTGATTGATTTTTTAAACTTTCATCAGCACTGGGATCCATCCTACATTCGACGGATGATGTTTCCTGTGATGTCGACGATCTTTTTAAGAAATATGGCTACAACTACAGTAGAAGATTTGTTATTTGGGCAATATGAATTTGATTCTTTAAAACGTGTGAAAATGAGATATGGATACCAGTTTTATGTGGTCAAGTGGAAACGTTGTGTGGGCAACATTGCCTTTAAAGCTTCATCAAAGGAATCTGGCGAGCAACAAGATGTTGCAGAGCTCGATGAAACGGTGAATCTACTGGATGACTCTGATGTACCTGAAATTCATGAAGATGATGGATCTAGTTTTCTGTTGACAGATGAAAATATGGACCTTGTAGGAGCTGCTTTTCCATCAGAAGTTGAAAGGTTTTGGCAGGAGCAGGAATTGAAGGATTTGAAAAGAAGAAAGAGTTCAACCTCAAGATCTCAAGAAAATGAAAAGTCAGCATCACCAAACTCAAAAAGCATCCAACTAAACATTACAGAGTTCTACCCATCAACCAAAGTTAGGCATGAATCAAAACAAGGAGAAGAGTCATCCAAGAATGCTGATATCATAGACAATGGAGGCTCAAAAATGAGAAGGAAAATGTCAAGTTCTAATCTTTCAAAATCTGTGAGGCGCCGCCTTTTATTTGACTAG 1827 0.4012 MGVGSNFWDLLKPYARNEGFDFLRNKRVAVDLSFWIVVHETAIKTRVRKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSQARILRYFRSSGIELTSLPVPEEGVSAKRNSLFSSCVRECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITSDSDAFLFGAKSIIKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVRGIGLDTALNFVKAFNEDDILNRLHEIGKGNASQIPTSIKSEDYLDMDGNSPSKKQPHCSFCGHPGTKRDHMKFPCEYCVTKDDEGCLRKPEGFKCDCFSCVLNRSHKEQKRQENWHAKICQKIAEEPNFPSDEIIDVYLCNDNGYFSANDGLHIEWKKPNIELLIDFLNFHQHWDPSYIRRMMFPVMSTIFLRNMATTTVEDLLFGQYEFDSLKRVKMRYGYQFYVVKWKRCVGNIAFKASSKESGEQQDVAELDETVNLLDDSDVPEIHEDDGSSFLLTDENMDLVGAAFPSEVERFWQEQELKDLKRRKSSTSRSQENEKSASPNSKSIQLNITEFYPSTKVRHESKQGEESSKNADIIDNGGSKMRRKMSSSNLSKSVRRRLLFD* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2190 608 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Apr4g2190 608 Pfam XPG N-terminal domain 1 89 IPR006085 GO:0004518
Apr4g2190 608 PANTHER FLAP ENDONUCLEASE GEN-LIKE 1 1 596 - -
Apr4g2190 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Apr4g2190 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Apr4g2190 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Apr4g2190 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Apr4g2190 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Apr4g2190 608 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Apr4g2190 608 SMART xpgn3 1 96 IPR006085 GO:0004518
Apr4g2190 608 CDD PIN_GEN1 2 202 - -
Apr4g2190 608 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 415 IPR036279 -
Apr4g2190 608 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 596 IPR006084 -
Apr4g2190 608 MobiDBLite consensus disorder prediction 562 576 - -
Apr4g2190 608 Gene3D - 198 260 - -
Apr4g2190 608 SMART xpgineu 128 198 IPR006086 GO:0004518
Apr4g2190 608 Gene3D - 4 197 - -
Apr4g2190 608 MobiDBLite consensus disorder prediction 538 561 - -
Apr4g2190 608 MobiDBLite consensus disorder prediction 529 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2190 Apr-Chr4 31004763 31009838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2190 16 271 Core DNA Replication Machinery Family AT5G26680 28.571 5.35e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2190 K15338 - gmx:100779848 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2190 4 31004763 31009838 Apr4g2190 4 31004763 31009838 ECH
Apr10g1420 10 26501908 26507959 Apr4g2190 4 31004763 31009838 ECH
Apr10g1419 10 26472256 26496043 Apr4g2190 4 31004763 31009838 ECH