Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2187 ATGTTGGGTTCAGGTACCAATTTGGTGACCACGGTTATTGGGTTTGGCATGAGTGCCACTTTCATTGTGTTTGTCTGCACCAGAATAATTTGTGGAAGGCTACGAGGGGGTGTTGAGTCTCGGATGATGTATGAGATTGATTCAAGAATTGATTTAGAACAGCCAGAACATCATGTTAATGACACTGAACCTGAACCTGTTCTGCTTGATGCAATCCCCACTTTGAAGTTCAACCAAGAGGCTTTCAGCTCTATTCAAGATACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTGTTGCGCATCATGCCTAAATGCGGCCACAGTTTTCATCTTTCTTGCATAGATATATGGCTGAGAAAACAATCTACATGTCCGGTATGCCGTCTGCCATTGAAAAACTCTTCTGAAACAAAGCATGTGAGACCTGTGACATTTACCATGAGCCAAACTCCTGATGACTCTCACTCATCAGAAAGGAATGAAGATATTGAGAGACATGTTGAACCTACTGCTAGTAACTCCTTGCAACCATCTTCTGGGGAACCAGAAGCTAGGCAATGA 573 0.4241 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYEIDSRIDLEQPEHHVNDTEPEPVLLDAIPTLKFNQEAFSSIQDTQCVICLADYKEREVLRIMPKCGHSFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQTPDDSHSSERNEDIERHVEPTASNSLQPSSGEPEARQ* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2187 190 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Apr4g2187 190 Pfam Ring finger domain 89 132 IPR001841 -
Apr4g2187 190 SUPERFAMILY RING/U-box 80 139 - -
Apr4g2187 190 SMART ring_2 90 131 IPR001841 -
Apr4g2187 190 PANTHER OS11G0150450 PROTEIN 1 167 - -
Apr4g2187 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 142 IPR013083 -
Apr4g2187 190 MobiDBLite consensus disorder prediction 173 190 - -
Apr4g2187 190 MobiDBLite consensus disorder prediction 158 172 - -
Apr4g2187 190 MobiDBLite consensus disorder prediction 144 190 - -
Apr4g2187 190 CDD RING-H2_EL5_like 89 132 - -
Apr4g2187 190 PANTHER OS02G0676500 PROTEIN 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2187 Apr-Chr4 30987647 30990021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2187 79 135 C3H Transcription Factor Family AT4G10160 54.386 3.90e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2187 - - gmx:100780922 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2187 4 30987647 30990021 Apr4g2187 4 30987647 30990021 ECH