Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2179 ATGACCATCACACAAGAAATTCTTTATCAACTCTATTCAGTAGACTCTTCGAACAGTGATATGGCTCACTTCACTATTTTTGGGGCTTCAGAATCAAGCGGTAAATTGAAAGGTTACCCTTTGATGTTACCAAATTACAATAACTTTTTGATGACCTTCAAATCTTTCTCCGAAGATTGTATAGAGCTTCTCCTTGAAAAAATAGGCATACCTCAAACTTACTATAACGGGCATGATTGTGACATGATTGATAACATTCTTAGAATGTTATGTGCCTTGGTATCGCAATGCGAGGGGCTTAAGAAAGAATATTTTTGCATATATGTTATGGAATTCAAGGGATGCTGTTTTTACAACGCACTGAATGTGACATCCTCTAGCTATATTGGACGAGTTCCATCAAGAGAGTTTGTGCAGAAAGTGGCTTGTGAGGGCAATTTTTCTTTGCCTGCGGGGGCATCAACACTCGTGAGATTCAAAGGAGATGAAGAGGAAAACTGTGCCATATGCTTGGGAGAGTTAAGGACTCGTGACAATGCAAGGTTGCCTTGTTCCCATGTTTGTCACTATGATTGTATCTTAGAATGGTTTGTGAAAAGTGGAACATGTCCTCTCTGTCGCTTCCGATGCAATGCCTCTAGTCACCGTTTGTCGCTTCCATCGTAG 666 0.4039 MTITQEILYQLYSVDSSNSDMAHFTIFGASESSGKLKGYPLMLPNYNNFLMTFKSFSEDCIELLLEKIGIPQTYYNGHDCDMIDNILRMLCALVSQCEGLKKEYFCIYVMEFKGCCFYNALNVTSSSYIGRVPSREFVQKVACEGNFSLPAGASTLVRFKGDEEENCAICLGELRTRDNARLPCSHVCHYDCILEWFVKSGTCPLCRFRCNASSHRLSLPS* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2179 221 SMART ring_2 167 206 IPR001841 -
Apr4g2179 221 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 158 209 - -
Apr4g2179 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 218 IPR013083 -
Apr4g2179 221 ProSiteProfiles Zinc finger RING-type profile. 167 207 IPR001841 -
Apr4g2179 221 Pfam Ring finger domain 166 207 IPR001841 -
Apr4g2179 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 158 209 - -
Apr4g2179 221 SUPERFAMILY RING/U-box 158 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2179 Apr-Chr4 30879533 30880198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2179 163 207 C3H Transcription Factor Family AT4G12190 51.020 5.28e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2179 - - aprc:113862471 466.077