Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2178 ATGATCTTCGCACTAAACATTTGTTATCAACTCGTTTCTAGAGAGAACGATGATACTGCTCACTTCACTATTTTTGGAGCTTCAGGATCAAGGCATGAAGTAGAAAGTTACCGTTTGATCTTTTCAGATTATCGTAACACTTTGATGACCTTCAAATCTTTCTCCGAAGATCGTATAGAGCTTCTCCTTGAAAAAATAGGCATACCTCAAACTTACTATAACGGGCATGATTGTGACATGATTGATAACATTCTTAGAATGTTATGTGCCTTGGTATCGCAATGGGATGGGATTAAGAAAAGATATTTTTGCATATATGTTATGGAATTCAAGGGATGCTGTTTTTACAACGCACTGAATATGACATACTCTAGCTATGTTGGACAAGCTCCAACAAGAGAGTTTGTGGAGAAAGTGGCTTGTGAGGGCAATTTTTCTTTGCCTGCGGGGGCATCAACACTTGTGAGATTCAAAGGAGATGAAGAGGAAAACTGTGCCATATGCTTGGGAGGGTTAAGGACTCGTGACAATCCAAGGTTGCCTTGTTCCCATGTTTGTCACTATGATTGTATCTTAGAATGGTTTGTGAAAAGTGGAACATGTCCTCTGTGTCGCTTCCGAATTGCAGTGTAG 633 0.3981 MIFALNICYQLVSRENDDTAHFTIFGASGSRHEVESYRLIFSDYRNTLMTFKSFSEDRIELLLEKIGIPQTYYNGHDCDMIDNILRMLCALVSQWDGIKKRYFCIYVMEFKGCCFYNALNMTYSSYVGQAPTREFVEKVACEGNFSLPAGASTLVRFKGDEEENCAICLGGLRTRDNPRLPCSHVCHYDCILEWFVKSGTCPLCRFRIAV* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2178 210 SUPERFAMILY RING/U-box 156 208 - -
Apr4g2178 210 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 157 208 - -
Apr4g2178 210 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 157 208 - -
Apr4g2178 210 ProSiteProfiles Zinc finger RING-type profile. 165 205 IPR001841 -
Apr4g2178 210 SMART ring_2 165 204 IPR001841 -
Apr4g2178 210 Pfam Ring finger domain 164 205 IPR001841 -
Apr4g2178 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 210 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2178 Apr-Chr4 30877597 30878229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2178 161 208 C3H Transcription Factor Family AT4G12190 48.077 3.62e-10 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2178 - K22378 aprc:113862471 352.829