Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2175 ATGAGTTTTGGGGGGTTTCTTGAGAAGAAACAAGGTGGTGGAGGTGCAAGGATCGTAGCAGATATTGCATATAACAACGGTTCCAACCACAACAACAGCATCAGCAACGATAGAATGCCCTCTAGTGCAATCTCACAGCCTCGTTTAGCCACTCCAACTTTGGCCAAATCCATGTTCAACTCTCCTGGCCTCTCTCTAGCGCTTCAAAGTGATATAGATGGACAAGAGGATGTAAACAGATTAATGGCTGAGAGTTTTGAGGGAAATGGTTTGAGAAGGAACAGAGAAGAAGAACATGAAAGCAGATCTGGTAGTGATAACATGGATGGAGGTTCTGGTGATGATTTTGATGCTGCCGACAACCCACCAAGAAAAAAGCGCTATCACCGACACACTCCTCAACAAATACAAGAACTTGAAGCGCTATTCAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGGCTTGAACTCAGCAAAAGGCTTAATTTGGAAACGAGGCAGGTGAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACACAATTGGAACGGCATGAGAACTCGCTGCTTAGGCAAGAGAATGATAAGCTTAGAGCAGAGAACATGTCCATGAGGGAAGCTATGAGGAATCCTATTTGCTCAAACTGTGGGGGTCCAGCCATGATTGGTGAGATTTCACTTGAAGAACAGCACTTAAGGATTGAGAATGCTCGATTGAAAGATGAACTAGACCGTGTTTGTGCACTTGCTGGCAAGTTTTTGGGTCGTCCAGTTTCATCTTTGGCAAGCTCAATTGGCCCTCCATTGCCAAACTCAAGTTTGGAACTTGGCGTCGGTAGTAATGGTTTTGGTGGTTTGAACACTGTGCCTTCAACATTGCCTTTGGGGCCTGATTTTGGGGTTGGAATATCAAGCTCCTTAGGCATGGTGTCACCTCCATCTAGACCAACAACTGTGGTGAGTACTGGTTTTGACAGATCAGTGGAGAGGTCTATATTTCTAGAGCTTGCTTTGGCTGCAATGGATGAGTTGGTGAAGATGGCTCAGACTGGTGAGCCTCTTTGGATCAGAAGTTTGGAAGGGGGAAGAGAAATTCTGAACCATGAGGAGTACACAAGGACAATGACTCCTTGCATTGGGTTGAAACCCAGTGGTTTTGTCTCTGAGGCTTCTAGAGAAACTGGCATGGTCATCATAAACAGCTTGGCCCTTGTTGAAACATTAATGGACTCGAATCGCTGGTTAGAGATGTTCCCTTGTGTAATTGCTAGAACCTCCACCACTGAAGTGATATCTAGTGGAATAAATGGAACAAGAAATGGTGCCCTTCAACTACACGCAGAAGGGGTATGGGCTGTTGTAGATGTGTCCATAGAAACCATCAGAGAAACTTCTGGTGCACCCACTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGCGTGGTGCAAGATATGCCGAATGGTTACTCTAAGGTAACATGGGTGGAGCATGCAGAATACGAGGAAAGCCAAGTCCACCAGCTCTACAGGCCCTTGTTGAGTTCAGGAATGGGGTTTGGTGCACAGCGTTGGGTGGCTACCCTTCAACGCCAATGCGAGTGTCTAGCCATCCTAATGTCCTCAGCAGTTCCCTCTAGAGAGCACTCAGCAATAAGTGGGGGTGGGAGACGAAGCATGTTGAAGCTGGCGCAGAGAATGACGAACAATTTCTGTGCGGGGGTGTGCGCGTCGACGGTGCATAAATGGAACAAGTTGAATGCGGGGAACGTGGGAGAGGACGTGAGGGTGATGACGAGGAAGAGCGTTGATGATCCCGGTGAGCCTCCGGGGATTGTGCTGAGTGCAGCCACCTCCGTTTGGCTCCCCGTTTCTCCTCAGAGGCTCTTCGATTTCCTCCGTGACGACAGACTCCGAAGCGAGTGGGACATCCTCTCCAACGGTGGACCCATGCAAGAGATGGCTCACATTGCCAAGGGACAAGACCATGCTAACTCGGTCTCCCTCCTTCGAGCCAGTGCTATGAATGCGAACCAGAGCAGCATGTTGATCCTGCAGGAGACTTGCACGGACGCGTCGGGGTCACTTGTGGTGTACGCGCCGGTTGACATCCCCGCCATGCACGTCGTAATGAATGGCGGCGACTCTGCTTACGTGGCGCTTCTCCCGTCTGGGTTCGCCATCGTGCCCGACGGACCCGGCAGCAGCGAAGATCAAGGCGGCGCGTCGCAGCAGAGAGTGAGTGGGTCCCTCTTGACTGTGGCGTTTCAGATACTTGTGAACAGCCTCCCCACGGCGAAGCTCACGGTGGAGTCGGTGGAGACAGTGAACAACCTCATCTCATGCACGGTGCAGAAGATAAAAGCAGCACTTCACTGCGAGAGCTAA 2388 0.4983 MSFGGFLEKKQGGGGARIVADIAYNNGSNHNNSISNDRMPSSAISQPRLATPTLAKSMFNSPGLSLALQSDIDGQEDVNRLMAESFEGNGLRRNREEEHESRSGSDNMDGGSGDDFDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLNLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPICSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPVSSLASSIGPPLPNSSLELGVGSNGFGGLNTVPSTLPLGPDFGVGISSSLGMVSPPSRPTTVVSTGFDRSVERSIFLELALAAMDELVKMAQTGEPLWIRSLEGGREILNHEEYTRTMTPCIGLKPSGFVSEASRETGMVIINSLALVETLMDSNRWLEMFPCVIARTSTTEVISSGINGTRNGALQLHAEGVWAVVDVSIETIRETSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYEESQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPSREHSAISGGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDDRLRSEWDILSNGGPMQEMAHIAKGQDHANSVSLLRASAMNANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSSEDQGGASQQRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2175 795 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 70 446 - -
Apr4g2175 795 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 447 792 - -
Apr4g2175 795 SUPERFAMILY Bet v1-like 330 535 - -
Apr4g2175 795 ProSiteProfiles START domain profile. 327 538 IPR002913 GO:0008289
Apr4g2175 795 SUPERFAMILY Bet v1-like 563 788 - -
Apr4g2175 795 SUPERFAMILY Homeodomain-like 108 182 IPR009057 -
Apr4g2175 795 Pfam START domain 336 445 IPR002913 GO:0008289
Apr4g2175 795 Pfam START domain 447 535 IPR002913 GO:0008289
Apr4g2175 795 MobiDBLite consensus disorder prediction 85 132 - -
Apr4g2175 795 SMART HOX_1 123 186 IPR001356 GO:0003677
Apr4g2175 795 Coils Coil 176 211 - -
Apr4g2175 795 MobiDBLite consensus disorder prediction 25 48 - -
Apr4g2175 795 SMART START_1 336 535 IPR002913 GO:0008289
Apr4g2175 795 CDD homeodomain 124 182 IPR001356 GO:0003677
Apr4g2175 795 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Apr4g2175 795 CDD START_ArGLABRA2_like 331 534 - -
Apr4g2175 795 Pfam Homeodomain 125 180 IPR001356 GO:0003677
Apr4g2175 795 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Apr4g2175 795 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 447 792 IPR042160 -
Apr4g2175 795 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 70 446 IPR042160 -
Apr4g2175 795 Gene3D - 113 198 - -
Apr4g2175 795 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2175 Apr-Chr4 30838107 30844208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2175 1 795 Homeobox Transcription Factor Family AT3G61150 63.170 0.0 997
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr4g2175 START 5.3e-11 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2175 K09338 - gmx:100787537 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2175 4 30838107 30844208 Apr4g2175 4 30838107 30844208 ECH
Apr10g1387 10 26093036 26100588 Apr4g2175 4 30838107 30844208 ECH