Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2172 ATGCAAAATTCAAATACTTCACCTCCTTCTCCTCTGGTGGACTCCGCGCCGTTTCTCCACCGTACAGGACGGTTCCTCAGACGCACGCCGCCGCCGCCACTCCGAACCGCCGCCCGGTTTTTCCGGCGAGCTAGTGGGCGGCGCATGATGCTTCGGGAGCCGTCGGTGCGTGTCCGGGAGGCGGCGGCGGCGGAGCTGGAGGAGCGGCAGAGCGACTGGGCGTACTCGAAGCCGGTGGTGGCGCTCGACGTGCTGTGGAACCTCGCGTTCCTCACGATTGGGATCACCGTATTGTGTTTGAGCACCACGGAGGTACCTTGCGTGCCCCTTAGAGTGTGGATTGTAGGGTACTTGTTACAGGGCGTGTTCCACTCTCTCTGTGTTGTTGTTGAGTTCAGAAGGAGAAGGACCTCGTTAGGTTCTAATTCTGTTTTAGATCATCGTGAATGGAGCTTCAGTTCTGAGAGTGATGACGAGTATTATGCTTCAGAACAGTTTCTAGAGGGTGAGGGAAACAGCATCACAAAACACATAGAGTCTGCAAATACCATGCTTTCATTCATATGGTGGATTATTGGATTCTATTGGGTGACTGCTGGTGGCCAGAATTTGATAAGGGATTCACCTCAGCTTTACTGGCTCTGTATTACATTTCTTGCGTTTGACGTTGTGATTGTACTGATCTGTGTTGCTGTTGCATGTCTAATTGGTATTGCCGTTTGCTGTTGTCTGCCATGCATACTTGCTATTTTATATGTCGTGGCAGAGCAGGAAGGGGCAACGAAGGAAGAGATTGATCAGTTGCCAAAATATAAGTTCGGAATGATAAAGGAATTTAAAAAAGGTGACATTGAAGAATCTTCCAGAGGAATAATGACAGAATGTGACAGTGAGAACGCCACTCAACGTGTTATTGCCTTAGAAGATGCTGAATGCTGTATCTGCCTTTCTGCCTATGATGATGGTGCTGAACTTAGAGAGCTTCCTTGCAACCACCATTTTCATTGCACATGCATTGACAAATGGCTGCTAATCAATGCTATCTGCCCTCTCTGCAAGTTTAATATTTTGAGGACTGATAACCACTATCAAGAAGTTTGA 1101 0.4841 MQNSNTSPPSPLVDSAPFLHRTGRFLRRTPPPPLRTAARFFRRASGRRMMLREPSVRVREAAAAELEERQSDWAYSKPVVALDVLWNLAFLTIGITVLCLSTTEVPCVPLRVWIVGYLLQGVFHSLCVVVEFRRRRTSLGSNSVLDHREWSFSSESDDEYYASEQFLEGEGNSITKHIESANTMLSFIWWIIGFYWVTAGGQNLIRDSPQLYWLCITFLAFDVVIVLICVAVACLIGIAVCCCLPCILAILYVVAEQEGATKEEIDQLPKYKFGMIKEFKKGDIEESSRGIMTECDSENATQRVIALEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLLINAICPLCKFNILRTDNHYQEV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2172 366 PANTHER TARGET OF ERK KINASE MPK-1 1 366 - -
Apr4g2172 366 CDD RING-H2_RNF111_like 311 355 - -
Apr4g2172 366 Pfam Ring finger domain 311 353 IPR001841 -
Apr4g2172 366 SUPERFAMILY RING/U-box 300 359 - -
Apr4g2172 366 SMART ring_2 312 352 IPR001841 -
Apr4g2172 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 362 IPR013083 -
Apr4g2172 366 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Apr4g2172 366 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2172 Apr-Chr4 30799119 30803978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2172 4 362 C3H Transcription Factor Family AT1G68070 47.778 1.08e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2172 - - gmx:100795425 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2172 4 30799119 30803978 Apr4g2172 4 30799119 30803978 ECH