Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr4g2169 | ATGGAAGGGAACGGCGACATGTTTAGAGCTTCGTCTCCGGGGGTGGGACCCTCCACGTCATCATCGTCGTTGTCGTCGGCTTCTAGAAGATACGGAATATTGTCGGCGTCTAACATTATTCAGGCGCCTTTATCGGTGTTGTTGGAATATTCCGGTATTCTTCCGTCACGGTCAAATCACCACAGCCAAGCTAACCCTGACGCCGTTGACAATGATGGCGAGGTTTCGATTAGGATCATTGGACCAACGGAACATGAGCATCAGAGGGAGGAACAGTCTCCTCCTGGTGGCGGTTTGGTGGTGGGGCTTTCTCATTCTCAGAATGAGGCCGGGTTGCCGTCTTCGCCCCCTCGCGGCGACGTTGAGGGCGTTTCGCAGGCTGTAAATGGGGGCGGGAATGGGGCGGCCGATGCTGAAGCTGCCGCGGGTGGTGGAGACGGTGTTGGGCCGAATGGGAGGGATTCTTCTTACCAGAGATATGATATTCAACATGCTGCTAGGTGGATTGAGCAGGTCTTGCCCTTTTCCTTGCTTCTCTTGGTGGTTTTCATCAGGCAGCATTTGCAAGGGTTTTTTGTTACGATTTGGATTGCTGCTGTTCTTTTCAAATCAAACGATATTCTACGGAAACAGACGGCGCTGAAGGGAGAGAGGAAAATACCTGTTTTGATTGGAATTTCTGTTATGTTTGCGCTTCATGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATATCATGTATCCCTTGATCATGCTTCCTCCCAAAGATATACCACCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGATACTTTGGTCCGCCAAGCTGCAATGGTATTCAAGTGTATGTTGTTGATGTATTACAAGAATAGCAGAGGTCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGAGCCTTGTTGCCAACCCCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGGAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAACTCACATCTGTTGTTGAAAAGCAGGTGCAATCCTTCTTTGCTGCAGTGAAGGCATTGTCACGTAAAGAAGTGCACTATGGAGCTTATGCAACATCTGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATTTGTCAGGAGAAGATGCATGCTCCAATCTTACTACGTTGTAAACACATTTTTTGTGAAGATTGTGTATCAGAGTGGTTTGAGAGAGAAAGGACTTGCCCATTGTGCAGGGCTTTGGTAAAACCCGCAGACCTCAGATCATTTGGGGATGGCTCTACTAGCTTGTTTTTCCAGTTATTCTGA | 1359 | 0.4687 | MEGNGDMFRASSPGVGPSTSSSSLSSASRRYGILSASNIIQAPLSVLLEYSGILPSRSNHHSQANPDAVDNDGEVSIRIIGPTEHEHQREEQSPPGGGLVVGLSHSQNEAGLPSSPPRGDVEGVSQAVNGGGNGAADAEAAAGGGDGVGPNGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPVLIGISVMFALHVVGVYWWYQNDDIMYPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCMLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKQVQSFFAAVKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* | 453 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr4g2169 | 452 | ProSitePatterns | Zinc finger RING-type signature. | 406 | 415 | IPR017907 | - | |
Apr4g2169 | 452 | CDD | RING-HC_RNFT1_like | 390 | 429 | - | - | |
Apr4g2169 | 452 | MobiDBLite | consensus disorder prediction | 13 | 28 | - | - | |
Apr4g2169 | 452 | Pfam | Zinc finger, C3HC4 type (RING finger) | 389 | 432 | - | - | |
Apr4g2169 | 452 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Apr4g2169 | 452 | MobiDBLite | consensus disorder prediction | 84 | 152 | - | - | |
Apr4g2169 | 452 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 19 | 452 | IPR044235 | GO:0061630|GO:1904294 | |
Apr4g2169 | 452 | SUPERFAMILY | RING/U-box | 384 | 434 | - | - | |
Apr4g2169 | 452 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 366 | 439 | IPR013083 | - | |
Apr4g2169 | 452 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 19 | 452 | - | - | |
Apr4g2169 | 452 | ProSiteProfiles | Zinc finger RING-type profile. | 391 | 429 | IPR001841 | - | |
Apr4g2169 | 452 | SMART | ring_2 | 391 | 428 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr4g2169 | Apr-Chr4 | 30782757 | 30786596 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr4g2169 | 17 | 452 | C3H Transcription Factor Family | AT5G01960 | 71.332 | 0.0 | 634 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr4g2169 | - | K22379 | gmx:100818546 | 687.952 |