Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2169 ATGGAAGGGAACGGCGACATGTTTAGAGCTTCGTCTCCGGGGGTGGGACCCTCCACGTCATCATCGTCGTTGTCGTCGGCTTCTAGAAGATACGGAATATTGTCGGCGTCTAACATTATTCAGGCGCCTTTATCGGTGTTGTTGGAATATTCCGGTATTCTTCCGTCACGGTCAAATCACCACAGCCAAGCTAACCCTGACGCCGTTGACAATGATGGCGAGGTTTCGATTAGGATCATTGGACCAACGGAACATGAGCATCAGAGGGAGGAACAGTCTCCTCCTGGTGGCGGTTTGGTGGTGGGGCTTTCTCATTCTCAGAATGAGGCCGGGTTGCCGTCTTCGCCCCCTCGCGGCGACGTTGAGGGCGTTTCGCAGGCTGTAAATGGGGGCGGGAATGGGGCGGCCGATGCTGAAGCTGCCGCGGGTGGTGGAGACGGTGTTGGGCCGAATGGGAGGGATTCTTCTTACCAGAGATATGATATTCAACATGCTGCTAGGTGGATTGAGCAGGTCTTGCCCTTTTCCTTGCTTCTCTTGGTGGTTTTCATCAGGCAGCATTTGCAAGGGTTTTTTGTTACGATTTGGATTGCTGCTGTTCTTTTCAAATCAAACGATATTCTACGGAAACAGACGGCGCTGAAGGGAGAGAGGAAAATACCTGTTTTGATTGGAATTTCTGTTATGTTTGCGCTTCATGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATATCATGTATCCCTTGATCATGCTTCCTCCCAAAGATATACCACCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGATACTTTGGTCCGCCAAGCTGCAATGGTATTCAAGTGTATGTTGTTGATGTATTACAAGAATAGCAGAGGTCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGAGCCTTGTTGCCAACCCCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGGAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAACTCACATCTGTTGTTGAAAAGCAGGTGCAATCCTTCTTTGCTGCAGTGAAGGCATTGTCACGTAAAGAAGTGCACTATGGAGCTTATGCAACATCTGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATTTGTCAGGAGAAGATGCATGCTCCAATCTTACTACGTTGTAAACACATTTTTTGTGAAGATTGTGTATCAGAGTGGTTTGAGAGAGAAAGGACTTGCCCATTGTGCAGGGCTTTGGTAAAACCCGCAGACCTCAGATCATTTGGGGATGGCTCTACTAGCTTGTTTTTCCAGTTATTCTGA 1359 0.4687 MEGNGDMFRASSPGVGPSTSSSSLSSASRRYGILSASNIIQAPLSVLLEYSGILPSRSNHHSQANPDAVDNDGEVSIRIIGPTEHEHQREEQSPPGGGLVVGLSHSQNEAGLPSSPPRGDVEGVSQAVNGGGNGAADAEAAAGGGDGVGPNGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPVLIGISVMFALHVVGVYWWYQNDDIMYPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCMLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKQVQSFFAAVKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 453
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2169 452 ProSitePatterns Zinc finger RING-type signature. 406 415 IPR017907 -
Apr4g2169 452 CDD RING-HC_RNFT1_like 390 429 - -
Apr4g2169 452 MobiDBLite consensus disorder prediction 13 28 - -
Apr4g2169 452 Pfam Zinc finger, C3HC4 type (RING finger) 389 432 - -
Apr4g2169 452 MobiDBLite consensus disorder prediction 1 28 - -
Apr4g2169 452 MobiDBLite consensus disorder prediction 84 152 - -
Apr4g2169 452 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 19 452 IPR044235 GO:0061630|GO:1904294
Apr4g2169 452 SUPERFAMILY RING/U-box 384 434 - -
Apr4g2169 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 439 IPR013083 -
Apr4g2169 452 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 452 - -
Apr4g2169 452 ProSiteProfiles Zinc finger RING-type profile. 391 429 IPR001841 -
Apr4g2169 452 SMART ring_2 391 428 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Apr4g2169 Apr-Chr4 30782757 30786596 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2169 17 452 C3H Transcription Factor Family AT5G01960 71.332 0.0 634
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2169 - K22379 gmx:100818546 687.952
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2169 4 30782757 30786596 Apr4g2169 4 30782757 30786596 ECH