Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2145 ATGGATAATCTTGGGTATAGTCGTAGTAAGGCAATTGAGGAACTTGTGAGAGGGCGTGATAGTGCCAAACAACTTATAAGTGTCATCAATGGAGGTTTTGATGATCGGTCAACAACCCCATTTGCTGAACAACTTGTGAAGGAGGTTCTCATGTCCTTTACCAACTCCCTCTTGTTTCTCAACAATCCCACTTCTGAACCCCATGATGTCTCTGATGTGCATGTTTGGGACTCTTCCAAGTCTGAAGACTCTCAAGAGAGTAATTGCAAGAGTTCCACAGTTAAGGAAAGAAGAGGGTGTTACAAGAGAAGAAGAACTGCACAAGCATGGGAGAAGGAGTCTGAAACTCCAATTGATGATGGGCATCATTGGAGAAAGTATGGTCAAAAGGAGATCCTGAATACCAAATACCCAAGGAACTACTATAGGTGCACTCACAAATTTGATCAATGTTGCCAAGCAACAAAACAGGTGCAAAGAGTTCAAGAGGAACCACCCCTTTACAAGACCACATACTATGGCCACCACACTTGCAAAAACTTTCTAAACCCTGAGATCATACTTGACCCTATTTCCCCTTCTGGTTCTTCCAAGTTCCTTAGCTTTGACAGCACCTTTCCAACTCCATCCCAACAAGAGTGCCCCTTTCTCTCATCAGTGAAAAGAGAGTGCAAAGAGGAGGTTCCTCCCTCATCTTCCTCCAATGATTACCTCTTCTCTTCTGAGCTCACTTTTGATAATTCACCAAGGCATGTCACTCTTTCATCAACCCTTGACTCAGAATACAAGGGTGTGGATCTTTCAGATGTCTTGTATGATTCTGCTAGCCTTGATGATGTCTTCGAGCCCTTTCTTGAATTTAGATGA 867 0.4314 MDNLGYSRSKAIEELVRGRDSAKQLISVINGGFDDRSTTPFAEQLVKEVLMSFTNSLLFLNNPTSEPHDVSDVHVWDSSKSEDSQESNCKSSTVKERRGCYKRRRTAQAWEKESETPIDDGHHWRKYGQKEILNTKYPRNYYRCTHKFDQCCQATKQVQRVQEEPPLYKTTYYGHHTCKNFLNPEIILDPISPSGSSKFLSFDSTFPTPSQQECPFLSSVKRECKEEVPPSSSSNDYLFSSELTFDNSPRHVTLSSTLDSEYKGVDLSDVLYDSASLDDVFEPFLEFR* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2145 288 Gene3D WRKY domain 103 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr4g2145 288 MobiDBLite consensus disorder prediction 70 91 - -
Apr4g2145 288 ProSiteProfiles WRKY domain profile. 113 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2145 288 SUPERFAMILY WRKY DNA-binding domain 115 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr4g2145 288 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 9 279 - -
Apr4g2145 288 Pfam WRKY DNA -binding domain 119 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2145 288 MobiDBLite consensus disorder prediction 68 91 - -
Apr4g2145 288 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 279 IPR044810 GO:0003700
Apr4g2145 288 SMART WRKY_cls 118 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2145 Apr-Chr4 30556907 30560007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2145 1 178 WRKY Transcription Factor Family AT3G56400 39.683 2.07e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr4g2145 WRKY 3.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2145 - - gmx:100805895 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2145 4 30556907 30560007 Apr4g2145 4 30556907 30560007 ECH