Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2141 ATGATGCAACAATTCAGCTTGTGTATGTTGTTTTTCATTCTTCTTGCCCCAGTTCTCTTGGTGTTCTCTGAGGACCCTGGTTTCAACGATGATGTGTTGGGGTTGATTGTGTTCAAGGCTGGTTTGGAAGACCCAAAAAGGAAACTTTCTTCTTGGAATGAGGATGATTATAGTCCTTGCAATTGGGAAGGTGTGAAATGTTATCCTTCAACCAACAGGGTATCTGCTCTTGTCCTTGATGGGTTCTCTCTTTCTGGGCATGTTGATAGAGGCCTATTGAGGTTGCAGTTCCTTCAAATTCTCTCACTCTCTGGGAACAACTTCACTGGGCCTATAAACCCTGATCTAACTCGCCTTGGGAGTTTGCAAGTTGTGGACTTGAGTGACAACAACCTCTCCGGGTCAATCCCAGAAGGGTTTTTCCAACAATGTGGCTCTCTCAGAACAGTTTCCTTTGCCAACAACAACCTCACAGGTAAGATTCCTGAGTCTTTGAGCTCATGCTCCAATTTGGCCACTGTTAACTTCTCCTCTAATAAGCTCTATGGGGAATTGCCTTCTGGGGTGTGGTTCTTGAGGGGACTACAGTCTCTTGATCTGTCAAATAACTTGCTGGAGGGAGAGATTCCTGAAGGAATTCAGAATCTGTATGACATGAGGGAGTTGAGTCTTCAGAAGAACAGGTTTAGTGGAAAGCTTCCTGGGGATATTGGAGGTTGCATACTTCTGAAATCACTTGACATGAGTGGTAATTTTCTCTCTGGAGAACTCCCTCAGTCAATGCAAAGACTCACTTCTTGCACATCACTTAGTTTGCAGGGAAATTCATTCACAGGAGGCATTCCTGACTGGATTGGAGAACTGAAAAATCTAGAGGTGTTGGATCTTTCTGGTAATAAATTTTCTGGATGGATTCCAAAATCAATTGGAAATCTAGACTCTTTGCATAGGTTGAATTTATCATGGAATCAGTTAACAGGAAACTTGCCTGATTCAATGGTAAATAGTACTAAGCTTTTGGCTCTTGACATCAGCCACAATCAGTTGGCAGGCCATATTCCTTCATGGATTTTTAGGATGGGTTCCACACCTGCATCTTATCATGGTCTTGAGGTTTTGGATTTGTCATCCAATGCATTTTCTGGTGAGCTTCCGTCTGGCATTGGGGGACTTAGTAGCTTGCAAGTCTTGAATATTTCCGCCAACAAAATCTCTGGTTACATTCCTGTGGGTTTAGGGGAACTTAAGTCTCTATATATTATTGACCTTAGTGACAACAAGCTTAACGGGAGTATTCCTTCTGAAATAGAAGGAGCAATTTCACTCAGTGAACTGAGGCTACAGAAGAACTTGCTAGGTGGGAGAATACCAGCTCAAATTGACAAGTGTTCATCTCTAACATTTTTGATTCTTTCACACAACAAGCTTACTGGTTCAATCCCTCCAGCCATTGCAAATCTAACGAATCTTCAGTATGTAGATTTGTCATGGAATGAATTCTCAGGAAGTTTGCCCAAGGAACTGACAAATCTTTCTCATCTTTTCACATTTAATGTATCCTACAACCACCTTGAAGGTGAACTACCTGTGGGAGGCTTCTTCAACACCATATCCTCGTCATCTGTTGCTGGTAATGCGTTGTTGTGCGGTTCTGTTGTCAACCACTCCTGCCCATCTGTTCACCCCAAACCTATTGTCTTAAATCCCAATTCTTCCAGTTCCAATTCCAGCATTTCCTCACAAAATCATCGTCATAAGATCATACTCAGTATCTCTGCTCTTATAGCTATTGGAGCAGCTGCTTTTATTGCCATTGGTGTGGTGGCAGTTACTGTCCTAAACATCCGTGTGCGCTCTTCAATGGCACGTTCTGCTGCTCCATTTGCATTATCTGGTGGGGAGGACTATAGCTGTTCACCGGCAAATGATCCAAATTATGGCAAGCTTGTCATGTTTGCTGGTGATGCAGATTTTGCTGATGGAGCCCATAATCTTCTTAACAAAGAAAGTGAAATTGGTCGTGGTGGATTTGGAGTTGTTTATCGCACTTTCCTTCGTGACGGGCATGCTGTTGCAATCAAGAAGCTTACAGTCTCCAGTTTGATCAAGTCCCAAGAAGACTTTGAGATAGAAGTGAAAAAGCTTGGGAAAATCAGGCACCAGAATCTCGTGACACTTGAAGGTTATTATTGGACTTCATCCTTGCAGCTACTCATTTATGAGTACCTATCCAGGGGGAGTTTGCATAAGCTTCTACATGATGATGATAGCAAAAATGTCTTCTCATGGCGACAAAGGTTCAAGATTATTCTTGGCATGGCAAAAGGGTTGGCTCATTTGCACCAAATGAACATAATCCACTACAATCTTAAATCAACCAATGTTCTCATTGATTGTTCCGGTGAGCCAAAAATAGGAGATTATGGCTTGGTGAAACTATTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCTCCTGAGTTTGCATGCCGCACAGTTAAGATAACTGAGAAATGTGACATATATGGTTTTGGGATCCTAGTGCTGGAGGTTGTCACTGGAAAAAGACCTGTGGAATACATGGAGGATGATGTGGTTGTTCTTTGTGACATGGTGAGGGGTGCATTGGAAGAAGGCAAGGTAGAGCAATGTGTTGATGGAAGGCTCCTTGGTAATTTTGCTGCTGAGGAAGCAATTCCTGTGATAAAATTGGGGTTGATTTGTGCATCACAAGTGCCATCAAACCGTCCAGATATGGCTGAAGTAGTCAACATATTAGAGTTAATCCAATGCCCTTCAGAAGGACAAGAGGAACTAGAATGA 2850 0.4253 MMQQFSLCMLFFILLAPVLLVFSEDPGFNDDVLGLIVFKAGLEDPKRKLSSWNEDDYSPCNWEGVKCYPSTNRVSALVLDGFSLSGHVDRGLLRLQFLQILSLSGNNFTGPINPDLTRLGSLQVVDLSDNNLSGSIPEGFFQQCGSLRTVSFANNNLTGKIPESLSSCSNLATVNFSSNKLYGELPSGVWFLRGLQSLDLSNNLLEGEIPEGIQNLYDMRELSLQKNRFSGKLPGDIGGCILLKSLDMSGNFLSGELPQSMQRLTSCTSLSLQGNSFTGGIPDWIGELKNLEVLDLSGNKFSGWIPKSIGNLDSLHRLNLSWNQLTGNLPDSMVNSTKLLALDISHNQLAGHIPSWIFRMGSTPASYHGLEVLDLSSNAFSGELPSGIGGLSSLQVLNISANKISGYIPVGLGELKSLYIIDLSDNKLNGSIPSEIEGAISLSELRLQKNLLGGRIPAQIDKCSSLTFLILSHNKLTGSIPPAIANLTNLQYVDLSWNEFSGSLPKELTNLSHLFTFNVSYNHLEGELPVGGFFNTISSSSVAGNALLCGSVVNHSCPSVHPKPIVLNPNSSSSNSSISSQNHRHKIILSISALIAIGAAAFIAIGVVAVTVLNIRVRSSMARSAAPFALSGGEDYSCSPANDPNYGKLVMFAGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEDFEIEVKKLGKIRHQNLVTLEGYYWTSSLQLLIYEYLSRGSLHKLLHDDDSKNVFSWRQRFKIILGMAKGLAHLHQMNIIHYNLKSTNVLIDCSGEPKIGDYGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVVNILELIQCPSEGQEELE* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2141 949 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Apr4g2141 949 SUPERFAMILY Protein kinase-like (PK-like) 667 939 IPR011009 -
Apr4g2141 949 Pfam Leucine rich repeat 268 325 IPR001611 GO:0005515
Apr4g2141 949 Pfam Leucine rich repeat 369 428 IPR001611 GO:0005515
Apr4g2141 949 Pfam Leucine rich repeat 121 181 IPR001611 GO:0005515
Apr4g2141 949 Pfam Leucine rich repeat 441 499 IPR001611 GO:0005515
Apr4g2141 949 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 7 940 - -
Apr4g2141 949 SMART LRR_sd22_2 487 513 - -
Apr4g2141 949 SMART LRR_sd22_2 192 215 - -
Apr4g2141 949 SMART LRR_sd22_2 288 314 - -
Apr4g2141 949 SMART LRR_sd22_2 415 438 - -
Apr4g2141 949 SMART LRR_typ_2 192 215 IPR003591 -
Apr4g2141 949 SMART LRR_typ_2 391 415 IPR003591 -
Apr4g2141 949 SMART LRR_typ_2 216 240 IPR003591 -
Apr4g2141 949 SMART LRR_typ_2 288 311 IPR003591 -
Apr4g2141 949 SMART LRR_typ_2 119 143 IPR003591 -
Apr4g2141 949 SMART LRR_typ_2 337 360 IPR003591 -
Apr4g2141 949 SMART LRR_typ_2 487 510 IPR003591 -
Apr4g2141 949 SMART LRR_typ_2 511 535 IPR003591 -
Apr4g2141 949 SMART LRR_typ_2 312 336 IPR003591 -
Apr4g2141 949 ProSiteProfiles Protein kinase domain profile. 666 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2141 949 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 940 - -
Apr4g2141 949 Gene3D Phosphorylase Kinase; domain 1 658 742 - -
Apr4g2141 949 ProSitePatterns Protein kinases ATP-binding region signature. 672 695 IPR017441 GO:0005524
Apr4g2141 949 CDD STKc_IRAK 672 938 - -
Apr4g2141 949 Gene3D Transferase(Phosphotransferase) domain 1 743 947 - -
Apr4g2141 949 Pfam Leucine Rich Repeat 243 263 IPR001611 GO:0005515
Apr4g2141 949 Pfam Leucine Rich Repeat 195 216 IPR001611 GO:0005515
Apr4g2141 949 SUPERFAMILY L domain-like 46 359 - -
Apr4g2141 949 SUPERFAMILY RNI-like 257 535 - -
Apr4g2141 949 Pfam Protein kinase domain 667 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2141 949 PRINTS Leucine-rich repeat signature 195 208 - -
Apr4g2141 949 PRINTS Leucine-rich repeat signature 288 301 - -
Apr4g2141 949 Gene3D Ribonuclease Inhibitor 28 246 IPR032675 -
Apr4g2141 949 Gene3D Ribonuclease Inhibitor 247 308 IPR032675 -
Apr4g2141 949 Gene3D Ribonuclease Inhibitor 309 563 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2141 Apr-Chr4 30509282 30512537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2141 8 948 Receptor kinase-like Gene Family AT3G56370 62.526 0.0 1147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Apr4g2141 Pkinase 5.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2141 - - gmx:100790365 1682.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2141 4 30509282 30512537 Apr4g2141 4 30509282 30512537 ECH
Apr4g2141 4 30509282 30512537 Apr10g0860 10 20950128 20953288 PCT