Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2136 ATGCAACGCCGTCTTCTAGAAACCGAGCTTACGATGCCACCGTCGTACGGAAACAACACCCGCGATTCGTTCATTAACGACACGAACTTCGACACCAACATGGTTATCATTTTGGCGGCACTGTTGTGCGCGTTGATATGCGCGTTGGGGTTGAACTCGATAGCTCGTTGCGCTCTACGGTGTAGCCGGAGATTCTCGGAGGAGACGCCGGAGCAAGCGGCGGCGAGGATGGCCGGAACGGGGCTGAAGAAGCGGGACCTGAGTCGGATTCCGGTCGCGGTGTACGGCGGCGGAGAGGATATTCCGGCAACGGAGTGCCCCATATGCCTCGGGGAGTTCGAGAAAGGGGACAAAGTTCGAATGTTACCAAAGTGCAATCACGGGTTTCATGTGAGGTGCATTGACACGTGGCTCGTGTCGCATTCTTCGTGCCCCAATTGTCGCCACTCGCTGTTAGAGAAACCCAACATTTGTTCTACCAGTTCTGCTTCTGATGTTACTCAGAACGGTGGAGGAGGGGTCGCCGGAGAGTTCTCTCCGGAAAGTGGGCCCGGCCGGCGGAGCAACGTGGTCGTTGTCGTAGAGCAGGCAAGTTGA 597 0.5662 MQRRLLETELTMPPSYGNNTRDSFINDTNFDTNMVIILAALLCALICALGLNSIARCALRCSRRFSEETPEQAAARMAGTGLKKRDLSRIPVAVYGGGEDIPATECPICLGEFEKGDKVRMLPKCNHGFHVRCIDTWLVSHSSCPNCRHSLLEKPNICSTSSASDVTQNGGGGVAGEFSPESGPGRRSNVVVVVEQAS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2136 198 MobiDBLite consensus disorder prediction 162 190 - -
Apr4g2136 198 CDD RING-H2_EL5_like 105 148 - -
Apr4g2136 198 Pfam Ring finger domain 105 148 IPR001841 -
Apr4g2136 198 SUPERFAMILY RING/U-box 99 159 - -
Apr4g2136 198 SMART ring_2 106 147 IPR001841 -
Apr4g2136 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 156 IPR013083 -
Apr4g2136 198 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Apr4g2136 198 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 195 - -
Apr4g2136 198 PANTHER RING-H2 FINGER PROTEIN ATL74 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2136 Apr-Chr4 30452607 30453594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2136 1 156 C3H Transcription Factor Family AT3G10910 59.639 8.05e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2136 K19040 - gmx:100814602 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2136 4 30452607 30453594 Apr4g2136 4 30452607 30453594 ECH