Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2116 ATGGCGTCAAGGGACCCAAGAAGAACCGCTCTGCAACATACGTTGCAGCAACTTCGGGATGTCACAAACTCCACTGCGTTGAACAAAGCCTCAATTATTGTGGATGCCTCCAAATACATAGAGGAGTTGAAGCAGAAAATAGAGGGACTGAACTCAGAGCTTGGAATTACTGAATCACCACTCACTCAAATTGACGAACTACCTATGGTAACAGTGAAAACCCTAAAAAAAGGTTTCCTCATTAACGTGCTTTTAGAAAAGAATTGCCCTGGTATGCTCGTCTCTATACTCGAAGTCTTTGAAGAACTTGGCCTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACAGTTTCCAGCTAGAAGCTGTGGGAAGAGAAAGTGAGAAGAACGACAGTGTCGACGAGCAAGTGGTGAAGCAAGCAGTGTTGCGAGCAATCAAGAACACGGACTAA 453 0.4459 MASRDPRRTALQHTLQQLRDVTNSTALNKASIIVDASKYIEELKQKIEGLNSELGITESPLTQIDELPMVTVKTLKKGFLINVLLEKNCPGMLVSILEVFEELGLDVLDARVSCEDSFQLEAVGRESEKNDSVDEQVVKQAVLRAIKNTD* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2116 150 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 150 - -
Apr4g2116 150 Coils Coil 33 53 - -
Apr4g2116 150 ProSiteProfiles ACT domain profile. 81 150 IPR002912 -
Apr4g2116 150 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 150 - -
Apr4g2116 150 Gene3D - 5 67 IPR036638 GO:0046983
Apr4g2116 150 CDD ACT_UUR-ACR-like 90 146 - -
Apr4g2116 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 59 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2116 Apr-Chr4 30169893 30172058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2116 25 144 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 31.783 1.25e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2116 - - vra:106759069 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2116 4 30169893 30172058 Apr9g1474 9 24314397 24315859 ECH
Apr4g2116 4 30169893 30172058 Apr10g2165 10 34169066 34170481 ECH
Apr4g2116 4 30169893 30172058 Apr4g2116 4 30169893 30172058 ECH
Apr4g2116 4 30169893 30172058 Apr10g0823 10 20423980 20425370 ECH