Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2100 ATGGCTTCATCACTCACCAATATAAATTCAAACTCAAGCTTTTCTTCATTGCCACCACAATTTATGATGACATCTTTCACTGATCTTCTCTCCAACAATAACAACAATAATACTAACATGACCATGGATGATCATAATAACTGGGGAACTTCTCAATTTAATCATGAAGTTGGACTTGAACTTGATGTTCCCAAATTCAAGTCTGTTCAACCGCCCTCACTACCTGTTTCTCCCTCACCAATTTCCCCTTCTTCTTATTTAGCCTTTTCATCTGGTTTCAGCCCAAGTGAATTCTTGAACTCACCTTTGTTTCTTCCTTCTCCAAGTATTCTTGCATCTCCTACTACTGAGGCTTTTGCTGGCCAGACCTTTAACTGGAGGAACAGTTCAGGTGAAGAACAACAACCTGACAAGGAGGATGAGAAAAATTTCACTGATTTCTCTTTCCAAACCCAAATTCAATCTTCCTCAAGCATGTTTCAAGTGGAACCACTTAAGAAACAAGACATATGGAAATTCAATGAACCGACAAAGCAAACTGATTTTTCATCTGAGAGAACATCAACAAAATCTGAATTCGCATCAATCCAGAATTTTTCCTCAGAAATGGCAGCAAGCAAACCAGAAATACAAAGTAATTCAGTTTCCGGGTCCGGTTATTTAAACTACACTAATTCATCCCAGTCTGTTAGAGAACAAAAGAGATCAGAAGATGGATTCAACTGGCGAAAATATGGACAGAAACAAGTTAAAGGGAGCGAAAATCCTCGCAGTTATTACAAGTGCACACATCCACATTGCTCAATGAAGAAGAAAGTTGAGAGGTCTTTGGATGGACAAATTACGGAAATAGTATATAAGGGCCATCATAACCACCCAAAACCACAGTCTACTAGAAGAACAAGCTCTCAAACAATTCATCAACCCTCTTCATCTTGCACCAACTCCGGGATTTCTGATCAATCAGTTGTGACCTTAGGCAATCCACAAATGGAGCCTGTCTCCATACAAGAAGATTCTTCAGCTTCTGTGGGGGAGGAAGATTTTGAGCAAACATCACAAACCAGTTATTCTGGAGGAAATGAAGACGACCTTGGACCAGAAGCCAAGAGATGGAAGGGAGATATTGAAAATGATGGCTATTCTGCCTCAGGGAGTAGAACTGTTAAAGAGCCTAGAGTTGTTGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGCTATAGGTGGAGGAAATATGGACAGAAAGTAGTCAAGGGAAACCCAAATGCAAGGAGTTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGAAAACATGTTGAGCGAGCTGCACACGACATCAAAGCTGTGATCACGACTTATGAGGGGAAACACAACCATGATGTACCTGCTGCACGTGGTAGCGCAGGCTATAATATGAACAGAAATTCTCTAAACAGCAACGTACCACCGCCTATTAGACCCTCGGCAGTGAACTGTTATTCAAGTTCATCAGGTTTCACAAATTCACTTTATAATACTAGGCTTCCAGTAACTGGAAATCAAGAATCATTTTCACCGGACAAGTTGCAGAACCCTGGAAGTTTTGGGTATTCGGCTCTTAGTAGATCAATTGGTTCATATGCCAATCATGCACAATACTCAGATGCTGCATACTCAAAGACCAAGGATGAGAGGAAGGATGACTCATTCCTTCAGTCATTTCTGTCAAAGGACTTCTAA 1728 0.4062 MASSLTNINSNSSFSSLPPQFMMTSFTDLLSNNNNNNTNMTMDDHNNWGTSQFNHEVGLELDVPKFKSVQPPSLPVSPSPISPSSYLAFSSGFSPSEFLNSPLFLPSPSILASPTTEAFAGQTFNWRNSSGEEQQPDKEDEKNFTDFSFQTQIQSSSSMFQVEPLKKQDIWKFNEPTKQTDFSSERTSTKSEFASIQNFSSEMAASKPEIQSNSVSGSGYLNYTNSSQSVREQKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPHCSMKKKVERSLDGQITEIVYKGHHNHPKPQSTRRTSSQTIHQPSSSCTNSGISDQSVVTLGNPQMEPVSIQEDSSASVGEEDFEQTSQTSYSGGNEDDLGPEAKRWKGDIENDGYSASGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSAGYNMNRNSLNSNVPPPIRPSAVNCYSSSSGFTNSLYNTRLPVTGNQESFSPDKLQNPGSFGYSALSRSIGSYANHAQYSDAAYSKTKDERKDDSFLQSFLSKDF* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2100 575 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 58 323 IPR044810 GO:0003700
Apr4g2100 575 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 340 573 IPR044810 GO:0003700
Apr4g2100 575 MobiDBLite consensus disorder prediction 224 259 - -
Apr4g2100 575 ProSiteProfiles WRKY domain profile. 231 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2100 575 SUPERFAMILY WRKY DNA-binding domain 232 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr4g2100 575 SUPERFAMILY WRKY DNA-binding domain 397 465 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr4g2100 575 Pfam WRKY DNA -binding domain 237 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2100 575 Pfam WRKY DNA -binding domain 406 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2100 575 MobiDBLite consensus disorder prediction 286 385 - -
Apr4g2100 575 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 340 573 - -
Apr4g2100 575 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 58 323 - -
Apr4g2100 575 MobiDBLite consensus disorder prediction 297 361 - -
Apr4g2100 575 Gene3D WRKY domain 392 458 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr4g2100 575 ProSiteProfiles WRKY domain profile. 400 465 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2100 575 SMART WRKY_cls 405 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2100 575 SMART WRKY_cls 236 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr4g2100 575 Gene3D WRKY domain 222 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2100 Apr-Chr4 29888774 29893228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2100 22 571 WRKY Transcription Factor Family AT2G38470 44.523 2.64e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr4g2100 WRKY 1.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2100 K13424 - gmx:100776837 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2100 4 29888774 29893228 Apr4g2100 4 29888774 29893228 ECH
Apr4g2100 4 29888774 29893228 Apr10g0810 10 20113918 20117853 PCT