Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2080 ATGAAGACTAATAATCTCGTTTCTGGGGACAGGAAATCACGCAAGAGACGCAGTGGTGGAACTGATTCAGTGGAAGATACTCTTGAAAAGTGGAAGGAGTATAATAGGCAGCAACAACTTGGTTCTAGAGAAAATGGGGTGGAAGCGATTCACAAAGTTCCGGCAAAAGGGTCAAGAAAAGGGTGCATGAGAGGCAAAGGAGGGCCTCAGAATTCTGATTGCAAGTTCAGAGGCGTGAGACAGAGGATTTGGGGCAAATGGGTTGCTGAAATTCGCGAACCTATCAATGGAAAGCTCGTGGGTGAGAAAGCAAATAGACTTTGGCTTGGTACTTTCGCTACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCTAAGGCTATGTATGGCCCTTATGCGCGGTTGAACTTTCCTGAGCCTTCTGTGGAGTCAATAGGCTCTAATGGATCATCATCTAGTGGATGTGATAAAAAATCAACAAGTGGTTCTGCTGACACGTTGAATGGTGGTGATCTTGCAAAAGCTGAGGAGTTGGAGGCGAATCTTCATCGGTCACATGAAGACAAACTCGGGTTTTCTGAGGTTGGTGTCCTTGAGGAAACAGAAGAGAAACCTGTTTTTTCTAAAGCTTGTGTGGCTGGTGACTCAACGGAGCAGTCCAAGGAAATGAAAATTGGCTTTGTTCAATGTCAAACAAGTGTAACTTTGAAGAATGTTGAGCCTGAAATACCTGGAGAAAATGGAGGAATAGAGAAAGGATTAGAAGAGGTTCTGAAAAACTCTGGCATAAGTGGAGAGGGTAATCAAGTGCAGAAGAAGCCTATGACTATAGAAATGAATACTAGAGATGACTATTGTAGATCTTCTGATGCTACTGAACAAGAGATTGTGGTGAAGTGTGAAGAACAAACAGAAGAATCAGTTGAAACTATGAAATCTTGTGAGTTGAGCTGCAGCAACCATTGCCTTGGATATATCCATAATAAGATTTCAGATACCAATCCAAGACCAAATTCTGAGCATTTTGATATCATCCAAACTGAGGCATCCATTGCAAAGAAACACACCGAGGAAGTAATTTCTGAAATCCTGGAACTTTGTAGCAGCAAGTGCTCAAAGATTAGACATGTCGAATCACAAAATGAGAAATATAAAAATGGACATTTTGATGAGATGAAAGCTAAGCTAACGGGCTTGGAATACAAGCTGAGAGCACATTCTATTGGTTGCAAGAATGAATCACCTTCCAATCATTCCATGCAGGGAATTCATCTATTTGGTGGTGGCAGTGTTGGACTTGAACCAATTGAAAGAATGTCTGAAGTTGAGGATTTGAACATCAATTCAAGTAAAAACTCTAAATTGCTAGAGAAAGGAAATAATGGAAGTGCATTACCTGGATTTAATTCAGGGCAGAGTAGGAAGCTGTGTGATCTTTCTCAACAGTTGCACAAACTGGGTGGTTACTTACCTGAATATTGGAATAATATGCAGTTTGCGGAATTGGATGGTGGTAATGATTATAGTTTCTTGAGTCCTGACTATGATTTTGGCTTATTGGAAGAGCAGAAGTTACTTGATATATGCTTTCCACATAGAGGATCTTAG 1611 0.4097 MKTNNLVSGDRKSRKRRSGGTDSVEDTLEKWKEYNRQQQLGSRENGVEAIHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKLVGEKANRLWLGTFATALEAALAYDEAAKAMYGPYARLNFPEPSVESIGSNGSSSSGCDKKSTSGSADTLNGGDLAKAEELEANLHRSHEDKLGFSEVGVLEETEEKPVFSKACVAGDSTEQSKEMKIGFVQCQTSVTLKNVEPEIPGENGGIEKGLEEVLKNSGISGEGNQVQKKPMTIEMNTRDDYCRSSDATEQEIVVKCEEQTEESVETMKSCELSCSNHCLGYIHNKISDTNPRPNSEHFDIIQTEASIAKKHTEEVISEILELCSSKCSKIRHVESQNEKYKNGHFDEMKAKLTGLEYKLRAHSIGCKNESPSNHSMQGIHLFGGGSVGLEPIERMSEVEDLNINSSKNSKLLEKGNNGSALPGFNSGQSRKLCDLSQQLHKLGGYLPEYWNNMQFAELDGGNDYSFLSPDYDFGLLEEQKLLDICFPHRGS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2080 536 MobiDBLite consensus disorder prediction 7 30 - -
Apr4g2080 536 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
Apr4g2080 536 MobiDBLite consensus disorder prediction 1 30 - -
Apr4g2080 536 MobiDBLite consensus disorder prediction 144 170 - -
Apr4g2080 536 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Apr4g2080 536 MobiDBLite consensus disorder prediction 144 168 - -
Apr4g2080 536 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Apr4g2080 536 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 405 - -
Apr4g2080 536 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Apr4g2080 536 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 405 - -
Apr4g2080 536 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Apr4g2080 536 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Apr4g2080 536 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
Apr4g2080 536 SUPERFAMILY DNA-binding domain 75 139 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2080 Apr-Chr4 29680925 29683225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2080 14 213 AP2-EREBP Transcription Factor Family AT2G40340 44.335 4.86e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g2080 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2080 - - aprc:113861479 1034.63