Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2078 ATGACCGTTACTCTCTTCATCCTTCTCTTCTTCTTCTTCTTCCACCCCGCCGTTTCTCTTTCCTCCGACGGCATCGCACTTCTCACTCTAAAATCCGCCGTCGACGCCTCCAGCGCCGCCGCATTCTCCAACTGGAATGACGCCGACGCCACCCCGTGCCGTTGGTCCGGCATCAGCTGCGCCAATATCTCCAGCGTCACGGAGCCCCGCGTCGTCGGCGTCGCTCTTTCCGGCAAAGGCCTCCGCGGTTACCTCCCGTCGGAGCTCGGAACCCTACTCTACCTCCGGCGCCTCAACCTCCACACCAACGCGTTCCATGGCTCTATCCCTGCGCAACTCTTCAATGCCACCGCTCTACACAGCATCTTCCTCCACGGCAACAACCTCTCCGGCAACCTCTCTCCCTCCGTCTGCAACCTCCCCCGCCTCGAAAACCTCGACCTCTCCGACAACTCCCTCTCCGGCGCCATCCCCGACACCCTCGGCAACTGCTCGCAACTTCAGCGCCTCATCCTCGCACGGAACAAGTTTTCCGGCAAGGTTCCGGCGACTCCGTGGCCGGAGCTGAAAAACCTAGTCCAACTCGACCTCTCCTCGAACCTTCTAGAAGGCTCAATCCCTAACCAACTCGGAGACCTTAAATCCCTTTCCGGAACCCTAAACCTCTCGTTCAACCATCTATCGGGTAAGGTTCCAAAGTCTTTAGGGAATTTACCAGTGACAGTTAGTTTCGATCTTCGGAACAACGATCTCAGCGGTGAGATTCCTCAAACGGGGTCGTTTTCGAACCAGGGACCCACCGCGTTTCTTAACAACCCGAACCTGTGCGGGTTCCCTTTGCAGAAATCGTGTAGCGGTTCAGCGCCGAGCGAACCGGGTTCGAGGCCCGGTTCGGCTCGTGAACCAGAAGGGCGTTCAACGAAAGGGATGAGTCCCGGTTTGATTATTTTGATATCGGTGGCTGATGCTGCTGGAGTGGCTTTGATTGGGCTTGTGATTGTGTACGTTTATTGGAAGAAGAAGGATAAAGCGAATGGGTGTAGTTGCACTTTGAAGAGAAAGTTTGGTGAAAACAATGAAAAATCGAGTTTGTGTTGTTGGTGTTCTTCTTTGGGATGTGTGAATGGGTTGAAGAGTGATGATTCAGAGGTGGAAGAAGGGGAGAAAGGAGGGGGAGAGGGTGGAAAAGGGGAAGGGGAATTGGTGGCAATTGATAAAGGTTTTAACTTTGAGCTTGATGAGCTATTGAGGGCCTCTGCATATGTGTTGGGGAAGAGTGGGTTGGGGATTGTGTATAAGGTGGTGCTTGGGAATGGGGTGCCTGTGGCTGTGAGGAGACTGGGGGAGGGTGGGGAACAAAGGTATAAGGAGTTTGCTGCTGAGGTTCAGGCCATTGGCAAAGTGAAGCACCCCAACGTTGTTAAGTTGAGAGCCTATTATTGGGCTCCTGATGAGAAGCTCTTGATCAGTGATTTCATCTCCAACGGCAATTTGGCCACTGCCCTTAGAGGGAGAAATGGTCAACCATCTCCTAACCTTTCATGGTCAACCAGGCTGGGGATCATCAAAGGAACAGGCAGGGGTTTAGCCTATCTCCATGAATGCAGTCCAAGAAAATTTGTGCATGGTGACATCAAACCCTCCAACATCCTCCTTGACAACGATTTCCATCCCCACATTTCGGATTTTGGTCTTAACAGACTAATCAGCATCACCGGCAACAACCCCTCCTCCGGTGGCTTTATGGGCGGAGCTCTTCCTTACTTGAAGCCATCACAAACAGAGCGAACTAACAACTATAAAGCCCCTGAGGCTCGAGTCCCAGGCTGCAGACCCACCCAGAAATGGGATGTATATTCATTTGGAGTTGTATTATTTGAACTGCTTACTGGGAAGTCCCCAGATTCTTCTCCCGCCCCATCAACTTCTGTGGAAGTCCCTGATTTGGTGAGGTGGGTTAGGAAAGGGTTTGAACAAGAAAGTCCTTTATCTGAAATGGTTGATCCATCACTTCTTCATGAAGTGCATGCCAAGAAAGAGGTACTAGCTGTGTTTCATGTAGCACTACAATGCACTGAGGGAGACCCTGAAGTCCGGCCTAGAATGAAAACTGTCTCCGAAAATCTTGAAAGAATTGGAACATAA 2145 0.517 MTVTLFILLFFFFFHPAVSLSSDGIALLTLKSAVDASSAAAFSNWNDADATPCRWSGISCANISSVTEPRVVGVALSGKGLRGYLPSELGTLLYLRRLNLHTNAFHGSIPAQLFNATALHSIFLHGNNLSGNLSPSVCNLPRLENLDLSDNSLSGAIPDTLGNCSQLQRLILARNKFSGKVPATPWPELKNLVQLDLSSNLLEGSIPNQLGDLKSLSGTLNLSFNHLSGKVPKSLGNLPVTVSFDLRNNDLSGEIPQTGSFSNQGPTAFLNNPNLCGFPLQKSCSGSAPSEPGSRPGSAREPEGRSTKGMSPGLIILISVADAAGVALIGLVIVYVYWKKKDKANGCSCTLKRKFGENNEKSSLCCWCSSLGCVNGLKSDDSEVEEGEKGGGEGGKGEGELVAIDKGFNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNVVKLRAYYWAPDEKLLISDFISNGNLATALRGRNGQPSPNLSWSTRLGIIKGTGRGLAYLHECSPRKFVHGDIKPSNILLDNDFHPHISDFGLNRLISITGNNPSSGGFMGGALPYLKPSQTERTNNYKAPEARVPGCRPTQKWDVYSFGVVLFELLTGKSPDSSPAPSTSVEVPDLVRWVRKGFEQESPLSEMVDPSLLHEVHAKKEVLAVFHVALQCTEGDPEVRPRMKTVSENLERIGT* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2078 714 SMART serkin_6 421 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2078 714 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 714 - -
Apr4g2078 714 SUPERFAMILY L domain-like 21 281 - -
Apr4g2078 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Apr4g2078 714 CDD STKc_IRAK 423 712 - -
Apr4g2078 714 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 3 714 - -
Apr4g2078 714 Gene3D Transferase(Phosphotransferase) domain 1 493 714 - -
Apr4g2078 714 Gene3D Phosphorylase Kinase; domain 1 402 492 - -
Apr4g2078 714 MobiDBLite consensus disorder prediction 283 307 - -
Apr4g2078 714 SUPERFAMILY Protein kinase-like (PK-like) 422 709 IPR011009 -
Apr4g2078 714 ProSiteProfiles Protein kinase domain profile. 417 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2078 714 PRINTS Leucine-rich repeat signature 143 156 - -
Apr4g2078 714 PRINTS Leucine-rich repeat signature 189 202 - -
Apr4g2078 714 Gene3D Ribonuclease Inhibitor 21 185 IPR032675 -
Apr4g2078 714 Gene3D Ribonuclease Inhibitor 186 286 IPR032675 -
Apr4g2078 714 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Apr4g2078 714 Pfam Protein kinase domain 422 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g2078 714 SMART LRR_typ_2 189 213 IPR003591 -
Apr4g2078 714 SMART LRR_typ_2 92 116 IPR003591 -
Apr4g2078 714 SMART LRR_typ_2 140 164 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2078 Apr-Chr4 29664593 29669275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2078 16 712 Receptor kinase-like Gene Family AT1G67510 70.787 0.0 997
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Apr4g2078 Pkinase 8.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2078 - - gmx:100795021 1233.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2078 4 29664593 29669275 Apr10g0786 10 19635446 19639106 PCT