Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2071 ATGGCCACAAACACTCCCCCAAACTTCCACACCATTTCCACAGAGTTACACAAAGAACTTTCACTACCTTCTTCACCAACCCACCACAACTTGCACTTCTGCCAATACATGATAGCAGGTTCCATAGCAGGTTTCGTGGAACATACCGCCATGTTCCCAATAGACACCCTCAAGACACGCATGCAGGCCCTTAATGGGCCCAGCTCTGTCCACTCATTGGGCCTTCGTAAAACTCTCTCTTCAATTATAAAACTCGAAGGCCCAAAACGACTCTACCGTGGCATAACCGCAATGGGCCTCGGTGCGGGACCCGCTCATGCAGTTTATTTTTCTGTCTACGAGGTTTGCAAGGAAACCTTAGAAAAGATGAACATAAACATGAACAAGAAGAACAACTCGGTAGTGCATGCGTTTTCTGGGGTGTGTGCAACGGTGGCGAGTGATGCGGTGTTTACGCCAATGGATGTGGTGAAGCAGAGGTTGCAGCTGAAGTGTAGTCCTTACAAGGGTGTGATGGATTGTGTGAAGAGGGTGGTGGTGGAAGAAGGGGTTGGGGCTTTCTTTGCGTCGTACCGTACGACGGTGGTGATGAATGCGCCGTTCACGGCGGTGCATTTTGCGACGTATGAGGCGGCGAAGAAGGGGTTGGTGGAGGTGTCGGCGGAGAGTGTGGATGATGAAAGATGGATTGTTCATGCTACGGCTGGTGCTGCTGCTGGAGCTTTGGCCGCTGCTGTTACAACCCCTCTTGATGTTGTTAAGACTCAGTTGCAGTGTCAGGGTGTATGTGGGTGTGACAAATTTTCTAGTAGTTCAATTGGGCATGTGATTCAAAGTGTGATAAGAAAGGATGGGTATCGGGGTCTTATGAGAGGATACATCCCTAGGATGCTTTTTCATGCACCTGCAGCTGCAATCTGTTGGTCCACTTACGAAGCATCAAAATCTTTCTTTCAGCAACGTAATGATAGCTCAAGTGTACACAAAATTCAAAAACAATAA 1002 0.484 MATNTPPNFHTISTELHKELSLPSSPTHHNLHFCQYMIAGSIAGFVEHTAMFPIDTLKTRMQALNGPSSVHSLGLRKTLSSIIKLEGPKRLYRGITAMGLGAGPAHAVYFSVYEVCKETLEKMNINMNKKNNSVVHAFSGVCATVASDAVFTPMDVVKQRLQLKCSPYKGVMDCVKRVVVEEGVGAFFASYRTTVVMNAPFTAVHFATYEAAKKGLVEVSAESVDDERWIVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCDKFSSSSIGHVIQSVIRKDGYRGLMRGYIPRMLFHAPAAAICWSTYEASKSFFQQRNDSSSVHKIQKQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2071 333 PANTHER MITOFERRIN-1-RELATED 1 325 - -
Apr4g2071 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 227 317 IPR018108 -
Apr4g2071 333 PRINTS Mitochondrial carrier protein signature 36 49 IPR002067 GO:0055085
Apr4g2071 333 PRINTS Mitochondrial carrier protein signature 49 63 IPR002067 GO:0055085
Apr4g2071 333 PRINTS Mitochondrial carrier protein signature 94 114 IPR002067 GO:0055085
Apr4g2071 333 PRINTS Mitochondrial carrier protein signature 146 164 IPR002067 GO:0055085
Apr4g2071 333 PRINTS Mitochondrial carrier protein signature 236 258 IPR002067 GO:0055085
Apr4g2071 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 131 215 IPR018108 -
Apr4g2071 333 PANTHER MITOFERRIN-LIKE 1 325 - -
Apr4g2071 333 SUPERFAMILY Mitochondrial carrier 30 312 IPR023395 -
Apr4g2071 333 Gene3D Mitochondrial carrier domain 223 331 IPR023395 -
Apr4g2071 333 Gene3D Mitochondrial carrier domain 9 222 IPR023395 -
Apr4g2071 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 31 119 IPR018108 -
Apr4g2071 333 Pfam Mitochondrial carrier protein 228 321 IPR018108 -
Apr4g2071 333 Pfam Mitochondrial carrier protein 132 217 IPR018108 -
Apr4g2071 333 Pfam Mitochondrial carrier protein 31 123 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2071 Apr-Chr4 29579381 29580951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2071 235 327 Chloroplast and Mitochondria Gene Families AT1G07030 31.183 3.94e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2071 K15113 - tcc:18597466 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2071 4 29579381 29580951 Apr4g2071 4 29579381 29580951 ECH