Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2066 ATGATGCAACCAGAGATTCTTCAGTCCCCATGGTTGTTCTATGAAGACATGAGCTCAACTTTTGATCAAGTTGTTGAGTCCTATGGTCTCACCATGGATGACCATGTTGGTGATTGTGGATCCTATGGCTTCACTGGGGACGACCATGTTGATGACTGTGGTCTATTATTAAGTACTCTATTGAGCACACAAGAGGATACTGCTTCTGAAGTCTGCTCCATCCCCTTTCCTTCCTCCCCTATATTCCCTAATGATCATGTCCAATACCCAATTGATGAAGAAACCTTGCAACTTCCATCATTGATGGAGTTGGATGATTTTGATTCCATTTTAAGTACACAAATTAATGGTATTCAAGGGCATGAATACCTAGGAGAAAGTGAAGGAAGTTTCCCTTTACAAAATTTGTCAAGTGAGGTACCACATGATGCATGGAGTCCTACCCCATCAGTGATGTCAGAGTTGTCCACAATTCAAACATCACTAACCTTGCCACAAGAAAACATGGAAATTGACAACCATGTTAGCCTTCCACACTTGATGGAAGCTTGTGGAGAAGCCTTGGAGCAAGGACAAAAAGCACTAGTTGAAGTGATCTTGAGGTGCATGAGCAAAAAAGCTAGCCCACTTGGTGAATCTCTAGAGCGCCTTGCATTCTACTTGTCTCAAGACACATCAAATCATGGAGAGTATCTCAAAGGGGAGGCCTTCAAGAACTTTGAGGCCGCTTTGAGAGCATTCTATCAAGGGCTCCCAATTGGAAAAATTGCTCACTTTGCATCTATTTCAACAATTCTAGAAGCTATACCTGAAGATTGTGATGCCATACACATAGTAGATTTTTGTATTGGACATGGTGTTCAGTGGCCTCCAATGATTGAGGCTATTGCACACAAGCACAAAACATTGAAATTGACATCAATCAAATGGGGTGATGAAAGCTCTGAATGTGTTTCTACTCCATGCAATTTTGAGGAAACTAGAAGACAGCTCTATGAGAATGCCAAATCTTGTGGTTTGAAGTTGATAGTAGAGGAGAAAGGAGTGGAGGAACTAGTTATTGAGATTAAAAAAATTAACAAAAAGGGTGGGAGAAAAGTGTTTTTGGCCTTCAATTGCATGATGGGTCTTCCACATATGGGAAAGGTAATGAGCATAAGACATGCCTTGGAGTTTCTACGGGTAGCTAAGGATTTGATCAACAACTCTGGCAACAGGGGGATTATCACTTTTGGAGATGGTGGAGCTTTTGAGAAAGTGAAAAATAGTTTGAATTTCAGATCATTCTTTGATGGACATTTGGTGCATTACCAAGCCTTGTTAGAATCAATGGAATCACATTTCCCAACTTGTTTCTCAGAAGCAAGAATTGCCATGGAGCAGTTGTTTTTGCAACCTTGTATCTCTTTTCTTGATTGGTTACAAACATGGGAGGAGATGAAAAGGGATTGCCACCTTGAGGCAGAGATTAGCTTAGAGGGTTGCAAATTGAGCAAAAATATTTTAATGGAAGTCAGAGAAGTGTTAAGAGGAAGTGATGGTTCGTACCAGGCCAAGATTGAAGGACAAAATTTTAATGAACTAGTTTTGGAATGGAAAGGAACTCAACTATTAAGATTTTCATCTTGGAAAAACTAA 1638 0.4023 MMQPEILQSPWLFYEDMSSTFDQVVESYGLTMDDHVGDCGSYGFTGDDHVDDCGLLLSTLLSTQEDTASEVCSIPFPSSPIFPNDHVQYPIDEETLQLPSLMELDDFDSILSTQINGIQGHEYLGESEGSFPLQNLSSEVPHDAWSPTPSVMSELSTIQTSLTLPQENMEIDNHVSLPHLMEACGEALEQGQKALVEVILRCMSKKASPLGESLERLAFYLSQDTSNHGEYLKGEAFKNFEAALRAFYQGLPIGKIAHFASISTILEAIPEDCDAIHIVDFCIGHGVQWPPMIEAIAHKHKTLKLTSIKWGDESSECVSTPCNFEETRRQLYENAKSCGLKLIVEEKGVEELVIEIKKINKKGGRKVFLAFNCMMGLPHMGKVMSIRHALEFLRVAKDLINNSGNRGIITFGDGGAFEKVKNSLNFRSFFDGHLVHYQALLESMESHFPTCFSEARIAMEQLFLQPCISFLDWLQTWEEMKRDCHLEAEISLEGCKLSKNILMEVREVLRGSDGSYQAKIEGQNFNELVLEWKGTQLLRFSSWKN* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2066 545 Pfam GRAS domain family 179 544 IPR005202 -
Apr4g2066 545 ProSiteProfiles GRAS family profile. 168 544 IPR005202 -
Apr4g2066 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 28 544 IPR005202 -
Apr4g2066 545 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 28 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2066 Apr-Chr4 29498546 29500183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2066 146 297 GRAS Transcription Factor Family AT1G66350 27.564 5.72e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr4g2066 GRAS 7.9e-34 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2066 - - gmx:100792407 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2066 4 29498546 29500183 Apr4g2066 4 29498546 29500183 ECH