Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2060 ATGGAGTGCGTTAACCCTACCCCTTCTGCAGGATCATCTTCAAAGTCCAACAAGAGCAGAGAGAAAAGGACTGTGAAGAAAAGCAAGGGAGTGAAGCTTTCCACTGACCCACAAAGCGTGGCAGCAAGAGAAAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTTCCTGGTGGTAGTAAGATGGACACAGTTTCTATGTTGGAAGAGGCCATTCACTACGTGAAGTTCCTCAAGACCCAGATTTGGCTTCACCAAACCATGATAAACCATGTAGATATTGATGACCCTTCCTTGTTCCTCCCTTCAGTGTATAATTTTTCTGATGAACAATCCATTTCCCTTCAGCAAAACCCATCAGTTTCAGTATATTCTCAGCATAGTTTACCACTGCCACCTCAGTGTTGCTTCCAAGGTGAAGAGTATAACACTTTCGATGCCAATATGACATACTGGCCTGCTTAG 477 0.4444 MECVNPTPSAGSSSKSNKSREKRTVKKSKGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKTQIWLHQTMINHVDIDDPSLFLPSVYNFSDEQSISLQQNPSVSVYSQHSLPLPPQCCFQGEEYNTFDANMTYWPA* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2060 158 CDD bHLH_AtIND_like 34 93 - -
Apr4g2060 158 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 14 148 IPR045843 GO:0003700|GO:0006355
Apr4g2060 158 Gene3D - 37 92 IPR036638 GO:0046983
Apr4g2060 158 MobiDBLite consensus disorder prediction 1 15 - -
Apr4g2060 158 SMART finulus 39 88 IPR011598 GO:0046983
Apr4g2060 158 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 14 148 - -
Apr4g2060 158 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 93 IPR036638 GO:0046983
Apr4g2060 158 MobiDBLite consensus disorder prediction 1 45 - -
Apr4g2060 158 Pfam Helix-loop-helix DNA-binding domain 43 82 IPR011598 GO:0046983
Apr4g2060 158 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 82 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2060 Apr-Chr4 29431988 29432464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2060 27 86 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 63.333 1.06e-22 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g2060 HLH 4.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2060 - - gmx:113000114 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2060 4 29431988 29432464 Apr4g2060 4 29431988 29432464 ECH