Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2055 ATGAGGACCCGTCCATCCATCACATGGGTCATCGTCGTGGCCATGTTCTATTTTCTCGCAAGCTTATCGCAATTGCAAGCCAAAACCATCGACCCTTACAAGGTTCTTGGGATAGATAAAAATGCAAGTCAGCGGGAAATTCAGAAGGCTTTCCACAAGCTCTCTCTGCAGTATCACCCTGACAAGAATAAAGCTAAGGGTGCTCAAGAGAAGTTTGCTCAGATCAATGATGCATATGAAATTTTATCGGATGAAGAAAAGAGGAAGAATTACGACATGTTTGGAGATGAGAAAGGAAATCCTGGATTTCACGCTGGCCATCCTGGAGGTCAGAGTGGATATACTTATGTTAGGACTGGTGGTCCTGCACAAAGCCATTTTACCTTCAAACCAGGGGAATGGCAGAATATGGGTGGGCAGGGAGGGTCTAAGCGATTTTCCTTTTCCTTTGGTAGTTCTGGAAATTCAGATCCTTTTGGATTTGATTTTAGTGATGTTTTTGACAATGTTTTTGCTGATGGAGGTGGTGGCAGATTTGGTAATGGTTTTGGCAGTTCAAAAAGTTCTCAATCTGGATCCAAGAGTTCTCCCAAAAGTTTTAGAGCCATAAATTCACACATCTACAAGCAAGAAATAGAAAATGAAGGGATGACTTGGCTTTTGTTATCTTATACACCCTCATTGAAAGGGACCCAGTACTTTGAATACACTGTAGAGGAGGTTGTCAGTTCATTGCAAGGAGCTTTGAAGGTTGGAAGCATTAACTGTGAAAAAGAAGTTTCATTCTGTAAGGAGCTTGGTGTATATCCGCACAAAGGTCCAAGGCTTTTTATTTTCTCTTACAAGGAGAATGAAAAGGGTTCTTTGGTGGAGTACAGTGGTGACTTGACTGTTAAGAATTTGAAGGCTTTCTGTGTAGAACACTGCCCAAGGTTCTCTAAACGGATCGACTTGAACCATCTTGATCAATTGAGCACTTCTGGAAAGTTGCCTAGGGTGTTGCTTCTCACCACCAAAAAGGACACTCCTGTAATTTGGCGTGTTCTTAGTGGCGTGTATCACAAACGCATTGCTTTCAGTGATGCAGAGGTTCATGATTTTTCTGATCCAATATTGAAAAGGCTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCCAATGGAGAGAAGCGTATTCTGAAAACTGGGATTTCAGTAAAAGATTTAGAATCTCCAATTCTTGATCTTACTAACATACTTGACAATTTTGAAAAAGTAAGCAAAAAGGAAGGATCAGGTCAGGCCAAGAAGGCACAAACTGATTCAGATGAGCGACACATACAGTTGCTTTCTAAGTCAAACACTGATGTTCTTTGTGGTGAGAAAACTCCAGTCTGCATAATTGGTGCCTTTAGATCTTCTAAAGCTAGAGAAAAACTAGAATCAATCCTCTCTTTGGTCTCTCAAAAATCTTTGTCAAGGAGACCAAATCATGGAGCCAGCAGCTCTAAGGACTCCATTTCCTATGCTCTATTGGATGCTTCAAAGCAACAGTCATTTCTAACTGCATTTGACAAAAAAGGTTTTAAATCATCAGATAAGTTGTTGATTGCATACAAACCTAAGAGAGGGAAGTACAGTGTATTTATGAGTGAAATGACAATAGAAGAGGTAGAGAATTTTATCAGCTCCGTTCTCAGTGGAGATATACCCTTCAGGGAAACACGTGGGAAGCCTCTACTCAAGTAG 1734 0.4095 MRTRPSITWVIVVAMFYFLASLSQLQAKTIDPYKVLGIDKNASQREIQKAFHKLSLQYHPDKNKAKGAQEKFAQINDAYEILSDEEKRKNYDMFGDEKGNPGFHAGHPGGQSGYTYVRTGGPAQSHFTFKPGEWQNMGGQGGSKRFSFSFGSSGNSDPFGFDFSDVFDNVFADGGGGRFGNGFGSSKSSQSGSKSSPKSFRAINSHIYKQEIENEGMTWLLLSYTPSLKGTQYFEYTVEEVVSSLQGALKVGSINCEKEVSFCKELGVYPHKGPRLFIFSYKENEKGSLVEYSGDLTVKNLKAFCVEHCPRFSKRIDLNHLDQLSTSGKLPRVLLLTTKKDTPVIWRVLSGVYHKRIAFSDAEVHDFSDPILKRLGVDALPAIVGWLPNGEKRILKTGISVKDLESPILDLTNILDNFEKVSKKEGSGQAKKAQTDSDERHIQLLSKSNTDVLCGEKTPVCIIGAFRSSKAREKLESILSLVSQKSLSRRPNHGASSSKDSISYALLDASKQQSFLTAFDKKGFKSSDKLLIAYKPKRGKYSVFMSEMTIEEVENFISSVLSGDIPFRETRGKPLLK* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2055 577 Coils Coil 65 85 - -
Apr4g2055 577 Gene3D Glutaredoxin 200 309 - -
Apr4g2055 577 SMART dnaj_3 30 87 IPR001623 -
Apr4g2055 577 Pfam DnaJ domain 31 92 IPR001623 -
Apr4g2055 577 Pfam Thioredoxin-like domain 202 305 - -
Apr4g2055 577 ProSitePatterns Nt-dnaJ domain signature. 72 91 IPR018253 -
Apr4g2055 577 Gene3D DnaJ domain 20 104 IPR036869 -
Apr4g2055 577 CDD DnaJ 31 84 IPR001623 -
Apr4g2055 577 SUPERFAMILY Thioredoxin-like 201 308 IPR036249 -
Apr4g2055 577 ProSiteProfiles dnaJ domain profile. 31 95 IPR001623 -
Apr4g2055 577 PANTHER DNAJ PROTEIN ERDJ3A 10 576 - -
Apr4g2055 577 PANTHER DNAJ PROTEIN ERDJ3A 10 576 - -
Apr4g2055 577 SUPERFAMILY Chaperone J-domain 16 96 IPR036869 -
Apr4g2055 577 PRINTS DnaJ domain signature 33 51 IPR001623 -
Apr4g2055 577 PRINTS DnaJ domain signature 51 66 IPR001623 -
Apr4g2055 577 PRINTS DnaJ domain signature 67 87 IPR001623 -
Apr4g2055 577 PRINTS DnaJ domain signature 87 106 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2055 Apr-Chr4 29381180 29384933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2055 33 92 C2H2 Transcription Factor Family AT1G74250 45.455 6.10e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2055 - - gmx:100796871 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2055 4 29381180 29384933 Apr4g2055 4 29381180 29384933 ECH